Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1540 ATGTCTAAACTCCCCCTCTATTTTATTTTCTTCATCTCATGCTCTCAGCTCTTTTTCTCTTCTTTCTCTTTCTCTAATTCCACCAAACTATGCCCTCATCACCAAACCCTTGCTCTACTCCAACTTAAGAAATCCTTTTCCGTTATTGACAATTCCAGTTTTTGGGGATGCGATTACTATGGTATTTCCATCTCTTCAGTTTTTCCTGATTCCTTGCTAAATCAGTCTTCTTTAATATCATTAGATCTCTCTTTGTGTGGATTACATGGGAGATTCCCTGACCATGGCATTCATCTTCCAAAACTCGAGCTTCTCAACTTATGGGGAAATGGTGATCTAAGTGGAAACTTCCCACGATTCAAGAACCTTACACAAATCACTTCTTTGTACCTCAATGGGAATCATTTTAGTGGTAATATTCCAAATGTTTTTAATAACCTTAGAAATTTAATTTCATTAGTCCTTTCTAGTAACAATTTCAGTGGTCAGCTTCCACCATCAATTGGAAATCTAACCAACCTTAAGTACTTAGACATCTCTAATAATCAGCTAGAAGGTGCAATTAATTTAAGTATGAATCAGTTATATGGGTCAATTCCAAGACCACTTCCAACTCCCCCATATTCTACATTTTTCTTTGCAATCTCCAATAACAAATTGAGTGGAGAAATCTCACCATCGATTTGCAAAGTGCATTCCATCGGAGTTCTTGATTTATCTAATAACAATTTGAGTGGCAGACTTCCACATTGTTTGGGGAATTTTAGCAAAGATCTTTCTGTTTTGAATTTACAAGGGAATCGATTTCATGGCACTATTCCTCAAACATTTTTGAAGGGCAATGTTATCAGGAATCTTGACTTCAATGGTAATCAATTGGAAGGCCTAGTACCCAGATCTTTGATCATTTGTAGAGAACTTGAAGTTCTAGACCTTGGAAATAACAAGATAAATGATACATTTCCCCATTGGTTGGAAACTCTTCCAAAGTTGCAAGTTCTTGTTTTGCGCTCTAATAGTTTCCATGGTCATATAGGGTTTTCCAAAATCAAATCCCCATTCATGAGCCTAAGAATCATTGATCTTGCTCGCAATGATTTCGAGGGTGACTTGCCTGAAATGTATTTGAGAAGTTTGAAAGCAATAATGAATGTAGATGAAGGCAAGATGACAAGAAAATATATGGGGGACCATTATTATCAAGATTCCATAATGGTGACAATCAAGGGGTTGGAGATTGAACTTGTGAAAATCTTGAATACTTTCACAACAATTGATTTATCAAGCAATAAATTCCAAGGAGAGATTCCAGAGTCTATTGGAAATCTTAATTCACTTCGAGAGCTCAATTTGTCTCACAACAACCTTGTTGGACATATCCCATCATCTTTTGGGAATTTGAAGTTGCTTGAATCATTGGACCTCTCTTCAAACAAGCTCATTGGGAGAATTCCTCAAGAATTGACAAGTTTAACATTTCTTGAAGTTTTGAATCTTTCCCAAAACCATCTCACTGGATTTATACCTCGAGGAAATCAGTTTGAGACATTTGGAAATGATTCATACAACGGGAACTCAGGGCTATGTGGATTTCCATTGTCGAAGAAATGTACAACTGATGAAACACTAGAACCTTCAAAAGAAGCGGATGCAGAGTTTGAAAGTGGATTTGATTGGAAAATCACATTGATGGGATATGGATGTGGATTGGTAATCGGGTTGTCTCTTGGGTGTTTCATTTTCTTAACTGGGAAACCTGAATGGTTTGTCCGTATTATTGAAGAGAATTTGCACAATAAGAGTAGAAGGTCTAAAAGGAGCACTCGTAGGCGAAGAGCAAGAAGAAACTAA 1851 36.79 MSKLPLYFIFFISCSQLFFSSFSFSNSTKLCPHHQTLALLQLKKSFSVIDNSSFWGCDYYGISISSVFPDSLLNQSSLISLDLSLCGLHGRFPDHGIHLPKLELLNLWGNGDLSGNFPRFKNLTQITSLYLNGNHFSGNIPNVFNNLRNLISLVLSSNNFSGQLPPSIGNLTNLKYLDISNNQLEGAINLSMNQLYGSIPRPLPTPPYSTFFFAISNNKLSGEISPSICKVHSIGVLDLSNNNLSGRLPHCLGNFSKDLSVLNLQGNRFHGTIPQTFLKGNVIRNLDFNGNQLEGLVPRSLIICRELEVLDLGNNKINDTFPHWLETLPKLQVLVLRSNSFHGHIGFSKIKSPFMSLRIIDLARNDFEGDLPEMYLRSLKAIMNVDEGKMTRKYMGDHYYQDSIMVTIKGLEIELVKILNTFTTIDLSSNKFQGEIPESIGNLNSLRELNLSHNNLVGHIPSSFGNLKLLESLDLSSNKLIGRIPQELTSLTFLEVLNLSQNHLTGFIPRGNQFETFGNDSYNGNSGLCGFPLSKKCTTDETLEPSKEADAEFESGFDWKITLMGYGCGLVIGLSLGCFIFLTGKPEWFVRIIEENLHNKSRRSKRSTRRRRARRN* 617
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 24785526 24788535 - Vvi18g1540 Vvi18g1540 781243

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1540 616 SUPERFAMILY L domain-like 31 256 - -
Vvi18g1540 616 Pfam Leucine rich repeat 423 480 IPR001611 GO:0005515
Vvi18g1540 616 Pfam Leucine rich repeat 125 184 IPR001611 GO:0005515
Vvi18g1540 616 PANTHER RECEPTOR-LIKE PROTEIN 57 587 - -
Vvi18g1540 616 SUPERFAMILY L domain-like 194 534 - -
Vvi18g1540 616 Pfam Leucine Rich Repeat 494 510 IPR001611 GO:0005515
Vvi18g1540 616 SMART LRR_typ_2 443 466 IPR003591 -
Vvi18g1540 616 SMART LRR_typ_2 147 171 IPR003591 -
Vvi18g1540 616 SMART LRR_typ_2 491 514 IPR003591 -
Vvi18g1540 616 SMART LRR_typ_2 467 490 IPR003591 -
Vvi18g1540 616 SMART LRR_typ_2 231 255 IPR003591 -
Vvi18g1540 616 SMART LRR_typ_2 123 146 IPR003591 -
Vvi18g1540 616 PRINTS Leucine-rich repeat signature 174 187 - -
Vvi18g1540 616 PRINTS Leucine-rich repeat signature 443 456 - -
Vvi18g1540 616 SMART LRR_sd22_2 171 192 - -
Vvi18g1540 616 SMART LRR_sd22_2 304 330 - -
Vvi18g1540 616 SMART LRR_sd22_2 419 445 - -
Vvi18g1540 616 SMART LRR_sd22_2 467 490 - -
Vvi18g1540 616 Gene3D Ribonuclease Inhibitor 190 545 IPR032675 -
Vvi18g1540 616 Gene3D Ribonuclease Inhibitor 32 189 IPR032675 -
Vvi18g1540 616 PANTHER RECEPTOR-LIKE PROTEIN 12 ISOFORM X1 57 587 IPR045273 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1540 - - - vri:117905714 842.032
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1540 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000755 0 0 0 0 0 3 1 3 4 4 2 3 2 4 7 2 3 9 0 2 11 1 3 5 3 2 4 3 1 7 89