Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1543 ATGAACTCTACTTTGGGGCTCTTAGAAAAAGTTGATTTGAGTGTCCACTGGAAGGATAAAAGAATGAAGCCACTCTTCACTTTTCACTGTCCTTGGATTAGAGGTGGTGGAGCAAGGCATCTCCTGTCATCTTCACTAGTTTTCTACCATGTGGATCCAACCGAAGTGAGAAACCAGACGGGGAGTTATGGGAAAGCATTTATGGAGTATGAAAAAGATGTGAGCAAGGAGAATAGAGAGAAGATAGAGAAGTGGAGAGCAGCCTTGAAAGAAGCAATCAATCTATCTGGATGGCACCTTCATAATCAACGAGGATCTATTCGCATCCCTGTCTCTTTCCAGTCTATAAATCCAACCCACCATCACCACCACCACCACACAAAAACCCATCCAAAACCCACAAGTTCTACAAGTCTCATGGCTCACACGCAAGCTATCAGATGGACCAAGGTCCAAGACGTGGAAGAGAAGCACATCCAGGAGTTGGGAGAATACGCCGTGGAGGAGCAGAACAAGAAGGAAAACTGGAACCTGGAATTCGAGAAAGTGTCTATGGGGTGGTTTCAGCACCTGGCAGGAAACATTTACAAACTCCATATCAAAGCCGATCTCGCCGGCACGTCCGGCGACTACGAGGCAATTGTGTGGAAGAAGCATAATCAGTGCAATGAGCTGATAAATTATCATAAAATATTGTTGACCAAACTTTGA 711 45.01 MNSTLGLLEKVDLSVHWKDKRMKPLFTFHCPWIRGGGARHLLSSSLVFYHVDPTEVRNQTGSYGKAFMEYEKDVSKENREKIEKWRAALKEAINLSGWHLHNQRGSIRIPVSFQSINPTHHHHHHHTKTHPKPTSSTSLMAHTQAIRWTKVQDVEEKHIQELGEYAVEEQNKKENWNLEFEKVSMGWFQHLAGNIYKLHIKADLAGTSGDYEAIVWKKHNQCNELINYHKILLTKL* 237
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 24839030 24849802 - Vvi18g1543 Vvi18g1543 781246

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1543 236 MobiDBLite consensus disorder prediction 117 136 - -
Vvi18g1543 236 PANTHER PHLOEM FILAMENT PROTEIN 141 232 - -
Vvi18g1543 236 Pfam TIR domain 46 101 IPR000157 GO:0007165
Vvi18g1543 236 SUPERFAMILY Toll/Interleukin receptor TIR domain 46 98 IPR035897 -
Vvi18g1543 236 Gene3D - 145 233 - -
Vvi18g1543 236 SUPERFAMILY Cystatin/monellin 148 226 IPR046350 -
Vvi18g1543 236 PANTHER PHLOEM FILAMENT PROTEIN 141 232 IPR027214 GO:0004869
Vvi18g1543 236 Gene3D - 43 112 IPR035897 -
Vvi18g1543 236 Pfam Aspartic acid proteinase inhibitor 151 227 IPR000010 GO:0004869
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1543 - - - vvi:104882701 85.1149
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1543 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .