Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1545 ATGGCTGATGAAACCGACGCCGCGCCTCCCCCAACGCTTCTTGCAGCGGCATCGGTGGTGCCACCAGAGACGGCGGCGCCACCCGAGACGGCGGCATCGGAGGAAGTTCTGACTGTGCTGGACGTCGCTCCGCCGGTGACTGAGAAGGAGGTCTCGCCGCAGAAACCGCCTCCTCCGCCCGAGGAGGTGGTGGCTGTGGTCGATTCGGAGAAGAAAGTGCCTCAGAATCTGGTGTCGTTCAAGGAGGAGAGCAACAGACTGGCGGATCTCAGCGAATCGGAGAGAAGGGCGCTGGAGGAGTTGAAGCAGTCGCACGAAAGCCCAACTCAAGAGGATGTGTCCATCTGGGGGATTCCACTGCTGAAAGACGAGAGAAGCGATATGATTCTTCTCAAATTTCTGAGGGCGAGAGAGTTCAAGGTGAAGGAAGCTTTCGCCATGCTAAAAAACACCATCTTTTGGAGGAAAGAGTTTGGCATTGACGCATTGGTGGATGATGATTTGGGTGAGCACTTGGAGAAGAGGATGAAGTTCCTGAGATGGAGGATTCAGTTCTTGGAAAGGAGTATCAGGAAGCTTGATTTCACCCCTGGCGGCGTCAACACTATCTTTCAGGTTAATGATCTCAAGAATTCTCCCGGACCCGGAAAATGGGAGCTTAGGCAAGCCACCAAACAGGCCCTCCAGCTGCTGCAGGACAATTACCCTGAATTCGTTGCTAAACAGGTGTTCATCAATGTTCCTTGGTGGTATCTCGCATTCTATATGATGATCAGTCCATTCTTGACTCAGAGGACCAAGAGCAAGTTTGTATTTGCAAGCCCAGCCAAATCTGCCAAAACACTTTTCAAATACATATCTCCTGAGCAAGTGCCAATTCAGTATGGTGGATTGAGTGTGGACTACTGTGATTGCAACCCTGATTTCGGCATTGCTGATCCAGTCACCGAGATTACTGTGAAACCATCAACCAAGCAAACAGTGGAAATATTAGTTTCTGAGCAATGCGTTATTGTATGGGAGGTCAGGGTAGTTGGGTGGGAGGTTGCCTACGGAGCTGAGTTCATTCCTGATGCTGAAGATGAGTATACCGTGGTTGTACAGAAGGCAACAAAGATGGCCCCAACTGATGATCCAGTAATGTGTAACAGTTTCAAAATCAAGGAACTCGGGAAGATAGTGATCACTATTGATAACCCAACATCAAAGAAGAAGAAGCTTCTCTATAGGTTCAAGAAAATTTTGGCTCTAATACTGTTGTATGTGCTTGTATTGGCGTTCCCTTCTATGTATATTTTGCTCTTACATGGATGGCTATTTATCGACATCATGTTGACCCTATATATTTATGAGTGTTATACTGCATGCGTGGAACATATTTGTTGCATATTTACCTCTGTTTGGTTCCCTTGA 1413 47.98 MADETDAAPPPTLLAAASVVPPETAAPPETAASEEVLTVLDVAPPVTEKEVSPQKPPPPPEEVVAVVDSEKKVPQNLVSFKEESNRLADLSESERRALEELKQSHESPTQEDVSIWGIPLLKDERSDMILLKFLRAREFKVKEAFAMLKNTIFWRKEFGIDALVDDDLGEHLEKRMKFLRWRIQFLERSIRKLDFTPGGVNTIFQVNDLKNSPGPGKWELRQATKQALQLLQDNYPEFVAKQVFINVPWWYLAFYMMISPFLTQRTKSKFVFASPAKSAKTLFKYISPEQVPIQYGGLSVDYCDCNPDFGIADPVTEITVKPSTKQTVEILVSEQCVIVWEVRVVGWEVAYGAEFIPDAEDEYTVVVQKATKMAPTDDPVMCNSFKIKELGKIVITIDNPTSKKKKLLYRFKKILALILLYVLVLAFPSMYILLLHGWLFIDIMLTLYIYECYTACVEHICCIFTSVWFP* 471
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 24871392 24874057 + Vvi18g1545 Vvi18g1545 781248

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1545 470 PANTHER PATELLIN-3 23 174 - -
Vvi18g1545 470 PANTHER PATELLIN-3 173 412 - -
Vvi18g1545 470 Coils Coil 81 101 - -
Vvi18g1545 470 Gene3D - 85 157 - -
Vvi18g1545 470 SMART sec14_4 159 300 IPR001251 -
Vvi18g1545 470 Pfam CRAL/TRIO domain 175 297 IPR001251 -
Vvi18g1545 470 MobiDBLite consensus disorder prediction 41 63 - -
Vvi18g1545 470 Gene3D GOLD domain 310 413 - -
Vvi18g1545 470 SMART CRAL_TRIO_N_2 126 151 IPR011074 -
Vvi18g1545 470 Pfam CRAL/TRIO, N-terminal domain 98 150 IPR011074 -
Vvi18g1545 470 CDD SEC14 177 298 IPR001251 -
Vvi18g1545 470 SUPERFAMILY CRAL/TRIO N-terminal domain 84 167 IPR036273 -
Vvi18g1545 470 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 177 303 IPR001251 -
Vvi18g1545 470 SUPERFAMILY CRAL/TRIO domain 173 305 IPR036865 -
Vvi18g1545 470 PANTHER PATELLIN-1 23 174 IPR044834 GO:0008289
Vvi18g1545 470 PANTHER PATELLIN-1 173 412 IPR044834 GO:0008289
Vvi18g1545 470 Gene3D - 168 309 IPR036865 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1545 - - - vvi:100247827 608.216
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1545 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000709 2 3 3 2 2 3 4 3 3 3 3 3 4 2 3 4 3 7 4 3 3 3 4 3 3 3 3 3 3 4 96