Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1546 ATGGAGGGATCCGGAAAAGAAGGCCACCCAGTGTGCTACAACGCATACGGAAAATTCCTGAACAAGGAACTGTATCAAAACACCTTCTCTGATGAGGAGAAGAGGCAGAACTTCCTCCGATGGCGGATTCAGTTCTTGGAGAAGAGCATAAGGAAGCTGGACTTCAGTCCCAATGGCATCAACACTATCATTCAGGTCAACGATCTCAAGAACTCCCCAGGACCATTCAAGAGGGAGCTCCGACAATCCACCAACCAGGCCCTCCACTTGCTCCAAGACAATTATCCCGAGTTTGTTGCCAAACAGATCTTTATCAATGTTCCATGGTGGTACTTGGCCTTCAATAGAATGATCAGTCCTTTCCTGACTCAAAGGACAAAGAGCAAGTTTGTATTTGCAGGGCCATCAAAATCCGCTGAAACCCTTTTCAAATATATTGCACCTGAGCAAGTCCCAGTGCAATATGGTGGACTGAAAAGGGATGGTGACACTGAATTCTCCATCTGTGACCCTGTTACATTGGTCACCATCAAACCGGGATGCAAACATGTTATTGAATTCCCATACTCTGAGCCATGCCAGCTAATTTGGGAACTTCGCGTTATCGGATGGGATGTGACCTATGGAGCTGAGTTTGTGCCCACTGTCGAGGGGGGGTACACAGTAATCGTCCAGAAAGCAAGGAAAATTGCCCCAACCGATGAACCAGTGATCAGCAACAGCTTCAAAATTGGGGAACCAGGCAAGGTCATTCTCACCATCGACAATCAAACCTCCAAGAAGAAGAAGCTCCTCTACAGGTCCAAGACTCAACCTTGTGACTAA 825 47.15 MEGSGKEGHPVCYNAYGKFLNKELYQNTFSDEEKRQNFLRWRIQFLEKSIRKLDFSPNGINTIIQVNDLKNSPGPFKRELRQSTNQALHLLQDNYPEFVAKQIFINVPWWYLAFNRMISPFLTQRTKSKFVFAGPSKSAETLFKYIAPEQVPVQYGGLKRDGDTEFSICDPVTLVTIKPGCKHVIEFPYSEPCQLIWELRVIGWDVTYGAEFVPTVEGGYTVIVQKARKIAPTDEPVISNSFKIGEPGKVILTIDNQTSKKKKLLYRSKTQPCD* 275
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 24889178 24892076 - Vvi18g1546 Vvi18g1546 781249

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1546 274 CDD SEC14 3 158 IPR001251 -
Vvi18g1546 274 SUPERFAMILY Supernatant protein factor (SPF), C-terminal domain 174 268 IPR036598 -
Vvi18g1546 274 Gene3D - 1 175 IPR036865 -
Vvi18g1546 274 PANTHER PATELLIN-1 1 273 IPR044834 GO:0008289
Vvi18g1546 274 ProSiteProfiles GOLD domain profile. 165 270 IPR009038 -
Vvi18g1546 274 Gene3D GOLD domain 176 270 - -
Vvi18g1546 274 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 1 163 IPR001251 -
Vvi18g1546 274 SUPERFAMILY CRAL/TRIO domain 4 159 IPR036865 -
Vvi18g1546 274 Pfam CRAL/TRIO domain 2 157 IPR001251 -
Vvi18g1546 274 PANTHER PATELLIN-LIKE PROTEIN 1 273 - -
Vvi18g1546 274 SMART sec14_4 1 160 IPR001251 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1546 - - K19996 vvi:100246049 568.54
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1546 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Sed11g1710 . . . . . . . . Bhi06g00290 Tan10g2120 Cmetu03g2111 . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000709 2 3 3 2 2 3 4 3 3 3 3 3 4 2 3 4 3 7 4 3 3 3 4 3 3 3 3 3 3 4 96