Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g155 ATGGGTTCCAACCACAAGAGTCTCCAGGCAATATTGGGCGCACCAGGAGTGAGGGGTAAGAGGGTAACGGCTCTATCAAAAGATGGATTAACTGATTTTGTGCTTTCCATGATCTCCAAGAAACAAGAGCTCAAAGAGCCATTTTATGTGCTTGATTTGGGTGTGGTGGTGAGTCTCATGGAGAAGTGGTCTCGGGCTCTGCCTCTGGTTCGACCCTTTTATGCTGTCAAGGCGGTGTTTGATACAGCCTCGCGGCTCGGCTTGCCTCGAATGCATGTGCTCAATATCGGTGGCGGCTTTACATCTGGGCCGCACTTCGATGACGCCACTTCTGCTATCAAATCGTCTCTCCAAGCCTACTTCCCTAACGAACATGGGTTAACCATCATAGGCGAGCCAGGCAGGTACTTCGCCGAATCGGCTTTCACTCTAGTCACCAATATTATTGGGAAGCGTGTGAGGTCGGAGCTGAGGGAAAATTTACGTAAGAAAATCGATTGTGTCTTTGCTTTGGAGTTTGGAATATTAATAATAAACATGGATTGTTGTAATGGTGTGCTTTATAATTTAATTAAACTATTTTCCTTATCCATTTCTAGAAAACAGAAATCATATAATTTCTTTTCTTACTGGATTGTACATGTAAAAAGTTCAATTCTTCTCAAAAAGTCAAAATCACCATGGTTATCTTAA 693 43.15 MGSNHKSLQAILGAPGVRGKRVTALSKDGLTDFVLSMISKKQELKEPFYVLDLGVVVSLMEKWSRALPLVRPFYAVKAVFDTASRLGLPRMHVLNIGGGFTSGPHFDDATSAIKSSLQAYFPNEHGLTIIGEPGRYFAESAFTLVTNIIGKRVRSELRENLRKKIDCVFALEFGILIINMDCCNGVLYNLIKLFSLSISRKQKSYNFFSYWIVHVKSSILLKKSKSPWLS* 231
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 1522792 1524300 + Vvi18g155 Vvi18g155 779858

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g155 230 Gene3D Lyase, Ornithine Decarboxylase; Chain A, domain 1 138 156 IPR009006 GO:0003824
Vvi18g155 230 Gene3D Lyase, Ornithine Decarboxylase; Chain A, domain 1 42 55 IPR009006 GO:0003824
Vvi18g155 230 SUPERFAMILY PLP-binding barrel 80 140 IPR029066 -
Vvi18g155 230 ProSitePatterns Orn/DAP/Arg decarboxylases family 2 signature 2. 84 101 IPR022657 -
Vvi18g155 230 Pfam Pyridoxal-dependent decarboxylase, pyridoxal binding domain 79 138 IPR022644 GO:0003824
Vvi18g155 230 Gene3D Alanine racemase 79 137 IPR029066 -
Vvi18g155 230 Gene3D Alanine racemase 56 78 IPR029066 -
Vvi18g155 230 PANTHER ORNITHINE DECARBOXYLASE-LIKE 18 78 - -
Vvi18g155 230 PANTHER ORNITHINE DECARBOXYLASE-LIKE 75 159 - -
Vvi18g155 230 PANTHER ARGININE/DIAMINOPIMELATE/ORNITHINE DECARBOXYLASE 75 159 IPR002433 GO:0006596
Vvi18g155 230 PANTHER ARGININE/DIAMINOPIMELATE/ORNITHINE DECARBOXYLASE 18 78 IPR002433 GO:0006596
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g155 K01581 E4.1.1.17, ODC1, speC, speF; ornithine decarboxylase [EC:4.1.1.17] - vvi:100232922 167.548
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g155 . . . . . . . . . . . . . . . . . . . . . . . . Cla08g01395 Cam08g1870 Cec08g1448 Cco08g1582 Clacu08g1563 . Cre08g1348 . . . . . . . Cme03g01541 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi08g01288 . Chy03g01049 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003217 0 2 0 0 0 3 1 3 2 1 2 2 2 1 1 2 2 1 2 3 1 1 2 2 1 3 4 2 1 3 50