Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1563 ATGTTCGACGGCGCCGGTGCGCAAGGGTTTCTCCGGCAGAGCAGCTTGCCGACGGAGTTCCTCTCCCAGATCAATTCGTCGGAGGGCTATTTTTCGAGCTTTGGGATTCCAGCAGGGTTCGACTACGCGGCGTCGCCGGCAGTGGATGGCTCTCCGACAGGGAAGCGGGCGAGGGAGTTGGAATCGCGAAGTTCGTCTAGGAAATTTTCATCTCAGTCGAAAGGGGAGCAGAGTTCTCGATTAACCGGTAGCGTGGCAAGCTTACTGGATGTGGACATGGAAAAGCTTTTAGAGGATTCAGTACCCTGCAGGGTTCGGGCCAAGCGGGGTTGTGCTACACATCCTCGCAGCATTGCAGAAAGAGTTCGGAGGACCCGAATCAGTGACAGAATAAGGAAACTTCAGGAACTTGTGCCCAATATGGATAAGCAAACAAACACTGCAGATATGCTAGAAGAGGCAGTAGAGTATGTCAAGTTTCTACAACAAAAAATTCAGGAACTGTCCGAGCATCAAAAAAAATGCACATGCTTAGCTAGAGAATAA 546 50.73 MFDGAGAQGFLRQSSLPTEFLSQINSSEGYFSSFGIPAGFDYAASPAVDGSPTGKRARELESRSSSRKFSSQSKGEQSSRLTGSVASLLDVDMEKLLEDSVPCRVRAKRGCATHPRSIAERVRRTRISDRIRKLQELVPNMDKQTNTADMLEEAVEYVKFLQQKIQELSEHQKKCTCLARE* 182
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 25210555 25216882 + Vvi18g1563 Vvi18g1563 781266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1563 181 MobiDBLite consensus disorder prediction 66 81 - -
Vvi18g1563 181 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 111 161 IPR011598 GO:0046983
Vvi18g1563 181 SMART finulus 117 167 IPR011598 GO:0046983
Vvi18g1563 181 CDD bHLH_AtbHLH_like 116 169 IPR045239 -
Vvi18g1563 181 Pfam Helix-loop-helix DNA-binding domain 116 162 IPR011598 GO:0046983
Vvi18g1563 181 Gene3D - 112 180 IPR036638 GO:0046983
Vvi18g1563 181 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 8 179 - -
Vvi18g1563 181 PANTHER TRANSCRIPTION FACTOR BHLH80 8 179 - -
Vvi18g1563 181 Coils Coil 151 181 - -
Vvi18g1563 181 MobiDBLite consensus disorder prediction 46 81 - -
Vvi18g1563 181 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 114 172 IPR036638 GO:0046983
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14294 PF00010 HLH 5.30E-11 No_clan Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1563 - - vvi:100252707 328.946