Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1567 ATGCAAAACCACAAAGATTTTTCTTCCCTTGGTCAATTTTATGTTTCAGATTGCAAGAATTGCTGCAAACTTAAGGTTTATGATGAAGTGGTCATGCACGCATGGCCACCCAAAGCCTTGGCAAAGCCTCCATCAAAATCCTTCTTTCAGCAAAGCCAAATCTCAAGCCGGAAAACTCCATGTCGGAACCTCATTACCATGTTCACCACACTTCCTCAACCTCTCCCTCTCGGAACAAAAAAAAAAAAAAAAAAACTATGGATTATCTCTCTGGGTTTACTGTTTATGCTTTCTGGAGTGAGGGGTGCTGCTCCAAGGAAGTGTATCAATGTGCCATTCAGTAGAAACTCTACGCCTACATGGGTTTTTTACCACATCAAGTCCTATAATGGAGGCTCTGAGATTCAGCTCATCCCTGACAAATGCATAGGAACTATTATTGCTTTCTATCTATCTTCTCAAAACTCAAAGCATGATGAAATAGACTTTGAGTTCTCGATCAACAAGTCTAACCAACCCTCCATTTTACAAACAAATGAAACGACGCGTGGTGGAGAGAATAGGATAGAGTTAGGGTTTTCAGAAAAGGCGGAGTGTTCTCTTTCTCTCTCTACGCTGCTCTTCGATCTAGGGTTTGGCAATTTTCATTAA 651 41.01 MQNHKDFSSLGQFYVSDCKNCCKLKVYDEVVMHAWPPKALAKPPSKSFFQQSQISSRKTPCRNLITMFTTLPQPLPLGTKKKKKKLWIISLGLLFMLSGVRGAAPRKCINVPFSRNSTPTWVFYHIKSYNGGSEIQLIPDKCIGTIIAFYLSSQNSKHDEIDFEFSINKSNQPSILQTNETTRGGENRIELGFSEKAECSLSLSTLLFDLGFGNFH* 217
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 25258426 25272284 - Vvi18g1567 Vvi18g1567 781270

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1567 216 Gene3D - 134 213 - -
Vvi18g1567 216 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 8-RELATED 84 145 IPR044791 GO:0004553
Vvi18g1567 216 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 8-RELATED 140 190 IPR044791 GO:0004553
Vvi18g1567 216 SUPERFAMILY Concanavalin A-like lectins/glucanases 135 187 IPR013320 -
Vvi18g1567 216 Pfam Glycosyl hydrolases family 16 133 190 IPR000757 GO:0004553|GO:0005975
Vvi18g1567 216 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 4 84 145 - -
Vvi18g1567 216 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 4 140 190 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1567 K08235 E2.4.1.207; xyloglucan:xyloglucosyl transferase [EC:2.4.1.207] - vvi:100232906 137.502
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1567 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .