Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g157 ATGGCCATCGTCACCTCCGCCGCAGTCGCCATCCCCTCATTCACCGGCCTCAAGGCCTCCGGCGCAACCATGACCCGCGCTGCCGCCACCGTCAAGACCATCACCGCACCGGCCCCGAGGCTCGTGGCCAAGGCTGCACTGAAGGACGTGGGAGTGGCCGTCGTCGCCACCGCCGCCAGCGCTTTGCTCGCCAGCAATGCCATGGCCATGGAGGTCTTGCTCGGCAGCAGCGACGGAGGCCTGGTGTTTGTGCCGTCGACCATCACCGTCCCCGCCGGAGAGAAGATCACGTTCAAGAACAATGCTGGCTTCCCTCACAACGTTGTGTTCGACGAGGATGAAGTTCCGTCCGGCGTCGACGTATCGAAAATCTCGATGTCCGAAGAGGATCTGTTGAATGCACCTGGAGAAGTGTACTCTGTGACTTTGACCGAGAAAGGTACCTACAGTTTCTACTGTTCTCCTCACCAGGGTGCTGGTATGGTGGGAAAGGTGACCGTTAATTAA 507 59.76 MAIVTSAAVAIPSFTGLKASGATMTRAAATVKTITAPAPRLVAKAALKDVGVAVVATAASALLASNAMAMEVLLGSSDGGLVFVPSTITVPAGEKITFKNNAGFPHNVVFDEDEVPSGVDVSKISMSEEDLLNAPGEVYSVTLTEKGTYSFYCSPHQGAGMVGKVTVN* 169
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 1535487 1536276 + Vvi18g157 Vvi18g157 779860

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g157 168 TIGRFAM cyanin_plasto: plastocyanin 71 168 IPR002387 GO:0005507|GO:0009055
Vvi18g157 168 CDD Plastocyanin 71 168 IPR002387 GO:0005507|GO:0009055
Vvi18g157 168 ProSitePatterns Type-1 copper (blue) proteins signature. 147 161 IPR028871 -
Vvi18g157 168 Pfam Copper binding proteins, plastocyanin/azurin family 71 168 IPR000923 GO:0005507|GO:0009055
Vvi18g157 168 PANTHER PLASTOCYANIN MAJOR ISOFORM, CHLOROPLASTIC-RELATED 1 168 - -
Vvi18g157 168 Gene3D - 70 168 IPR008972 -
Vvi18g157 168 SUPERFAMILY Cupredoxins 67 168 IPR008972 -
Vvi18g157 168 PRINTS Plastocyanin signature 75 94 IPR002387 GO:0005507|GO:0009055
Vvi18g157 168 PRINTS Plastocyanin signature 98 116 IPR002387 GO:0005507|GO:0009055
Vvi18g157 168 PRINTS Plastocyanin signature 147 166 IPR002387 GO:0005507|GO:0009055
Vvi18g157 168 PRINTS Type I copper blue protein family signature 89 102 IPR001235 GO:0005507|GO:0009055
Vvi18g157 168 PRINTS Type I copper blue protein family signature 104 119 IPR001235 GO:0005507|GO:0009055
Vvi18g157 168 PRINTS Type I copper blue protein family signature 145 159 IPR001235 GO:0005507|GO:0009055
Vvi18g157 168 PANTHER PLASTOCYANIN 1 168 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g157 K02638 petE; plastocyanin - vvi:100248911 304.293
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g157 Blo01g01613 . . . Bpe02g00333 Bpe04g00263 Bma04g00264 Bma01g02387 . . . Cma09g00082 . . . Cpe06g00046 . . . . . . . . . . . . . . . . . . . Lsi04g01781 . Chy04g00389 . . . . . . . . . . . Cmo09g00081 . . . Car09g00071 . . . . . . . . . Cla05g01595 Cam05g1706 Cec05g1706 Cco05g1762 Clacu05g1693 Cmu05g1582 Cre05g1699 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011843 1 1 1 2 2 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 0 0 1 1 1 2 1 1 30