Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g158 ATGGCGGATGATTCTGAAACCATAGTGTATCTTCACGGTGATTTAGATTTGAACATTATTGAAGCTCGATACTTGCCGAATATGGATTTGATGTCTGAGCGTATTCGGCGGTGCTTCACGGCTTTCGACTCGTGCCGGGCTCCGTTCTCCGGTGGAAGGAAGAAAGGGCGCCACCACAAGATCATTACCAGCGATCCTTATGTCACCGTCTGCCTGGCCGGAGCGACGGTGGCGCGGACTCGCGTCATCTCCAATTCTCAGCACCCTGTGTGGAACGAACACCTTAAAATCCCTCTGGCTCACCCGGTCTCCTGCGTCGAGTTCCAGGTGAAAGACAACGATGTATTCGGCGCTGACATGATTGGAACCGCTACCGTGTCTGCGGAAAGAATCAGAACCGACCATTTTGGCGTTAAACAGAGTTATTTCCCGGTGCGGCTAGGCGGCTCTGTGACTCTTTACCAGGACGCGCATGTTCCCAACGGTATGCTTCCTGAGCTTGAGTTGGATGATGGAGTGGTGTATCAACACGGGAAATGCTGGGAAGACATTTGCCACTCAATCCTGGAGGCTCATCATTTGGTCTATATTGTGGGTTGGTCAGTGTACCATAAGGTGAAGCTAGTTCGAGAACCGACTAGGCCTTTACCTAGTGGTGGCAATTTGAATCTTGGCGAGTTGCTCAAGTATAAATCTCAAGAAGGGGTGAGAGTTTTGTTGTTGGTTTGGGATGATAAGACTTCCCACAGCAGATTCTTGGTTAATACGGTAGGAGTGATGCAAACTCATGACGAGGAAACTCGGAAGTTTTTCAAGCACTCTTCTGTTCTTTGTGTGCTGTCACCTCGTTATGCCAGCAAAAGAAAATTTAAAATTGCTAAAGAGAGGGTAGGTCCAGATGGGGCTTTTATTTTCTATCAAGTGGGATGGCAGAGGTGGACCTCACATTTGGGAATTCCAACTTATATAAGTGTCGTTGGCACGCTCTTTACACACCATCAAAAATGTGTGATTGTGGATACACAAGCATCTGGAAATAACCGGAAGATAACTGCCTTTCTAGGAGGTTTAGACCTTTGTGATGGCCGCTATGATACACCCGAACATCGTTTGTGTCATGATCTTGACACTGTATTTCAGAATGATTATCACAATCCAACATTTTCTGCAGTAAGTAAGGGTCCAAGGCAACCATGGCACGATTTGCATTGCAAAATTGAGGGGCCTGCTGCATATGACGTGCTTACAAACTTTGAGCAGCGTTGGCGAAAAGCCACAAAATGGTCAGAGTTTGGGCGACGTTTCAAAAGGATAACTCATTGGCATGAAGATGCCTTAATCAAGTTAGAGCGCATCTCATGGATACTTAGCCCTTCCCCATCTGTTCCATATGATGATCCTAGCTTATGGGTTTCTGAAGAAAATGATCCTGAAAATTGGCATGTTCAGGTCTTTAGATCTATAGATTCAGGATCTTTGAGAGGATTTCCCAAAGATGTTCCTTCAGCTGAGGCTCAGAACCTAGTCTGTGCAAAAAACTTGGTGATAGACAAGAGCATTCAAACAGCATACATCCAGGCAATCAGATCTGCCCAACACTTCATCTATATTGAGAATCAGTATTTTATTGGATCTTCTTATGCGTGGCCATCTTATAAAAACGCAGGAGCTGATAATCTGATTCCGATGGAGTTGGCACTAAAGATTGCTAGTAAGATAAGAGCAAAGGAGAGATTTTCAGTTTATGTTGTCATACCAATGTGGCCTGAGGGCAACCCCTCCTGTGCCTCTGTGCAAGAAATTTTGTTTTGGCAGGGGCAAACAATGCAAATGATGTATGATATTATAGCACAAGAGCTGCAATCCATGCAACTTGAGGATGCACACCCACAAGACTACCTCAATTTCTACTGTCTTGGTAATCGGGAAGAACCACCCAAAGAAGTGTCAAGTTCAAACACACAAGCCTCTGACGGGGTTTCCACTTCAAAGAAGTTTCATCGATTTATGATTTATGTACATGCCAAGGGAATGATAGTAGATGATGAGTATGTGATATTGGGGTCTGCCAATATTAACCAAAGATCTATGGCTGGTTCAAGAGACACTGAGATAGCTATGGGTGCATATCAGCCTCGCCACACTTGGGCCAAGAAGAAGAAACATCCACATGGCCAGATATACGGGTACAGAATGTCCTTGTGGGCAGAGCACCTAGGGATGATAAATAATAGTTTCAAGGAGCCTCAAACCTTGGATTGTGTGAAGAATGTGAACAAGATGGCTGAAGAGAACTGGAAGAGGTTCACAAGTGATGCTTACACCCCATTGCAAGGCCACCTTCTTAAATATCCCATCCAGGTAGATGTTGACGGGAAGGTAAGACCCTTGCCCGGACATGAGACTTTTCCTGACTTTGGTGGTAAGGTGCTTGGTACTCGATGTAATCTTCCAGATGCTCTAACTACATAG 2472 45.19 MADDSETIVYLHGDLDLNIIEARYLPNMDLMSERIRRCFTAFDSCRAPFSGGRKKGRHHKIITSDPYVTVCLAGATVARTRVISNSQHPVWNEHLKIPLAHPVSCVEFQVKDNDVFGADMIGTATVSAERIRTDHFGVKQSYFPVRLGGSVTLYQDAHVPNGMLPELELDDGVVYQHGKCWEDICHSILEAHHLVYIVGWSVYHKVKLVREPTRPLPSGGNLNLGELLKYKSQEGVRVLLLVWDDKTSHSRFLVNTVGVMQTHDEETRKFFKHSSVLCVLSPRYASKRKFKIAKERVGPDGAFIFYQVGWQRWTSHLGIPTYISVVGTLFTHHQKCVIVDTQASGNNRKITAFLGGLDLCDGRYDTPEHRLCHDLDTVFQNDYHNPTFSAVSKGPRQPWHDLHCKIEGPAAYDVLTNFEQRWRKATKWSEFGRRFKRITHWHEDALIKLERISWILSPSPSVPYDDPSLWVSEENDPENWHVQVFRSIDSGSLRGFPKDVPSAEAQNLVCAKNLVIDKSIQTAYIQAIRSAQHFIYIENQYFIGSSYAWPSYKNAGADNLIPMELALKIASKIRAKERFSVYVVIPMWPEGNPSCASVQEILFWQGQTMQMMYDIIAQELQSMQLEDAHPQDYLNFYCLGNREEPPKEVSSSNTQASDGVSTSKKFHRFMIYVHAKGMIVDDEYVILGSANINQRSMAGSRDTEIAMGAYQPRHTWAKKKKHPHGQIYGYRMSLWAEHLGMINNSFKEPQTLDCVKNVNKMAEENWKRFTSDAYTPLQGHLLKYPIQVDVDGKVRPLPGHETFPDFGGKVLGTRCNLPDALTT* 824
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 1536670 1544403 - Vvi18g158 Vvi18g158 779861
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g158 823 ProSiteProfiles C2 domain profile. 1 142 IPR000008 -
Vvi18g158 823 SMART C2_3c 14 140 IPR000008 -
Vvi18g158 823 Gene3D C2 domain 8 154 IPR035892 -
Vvi18g158 823 Gene3D Endonuclease Chain A 494 721 - -
Vvi18g158 823 Pfam Phospholipase D C terminal 744 813 IPR024632 -
Vvi18g158 823 SUPERFAMILY Phospholipase D/nuclease 128 434 - -
Vvi18g158 823 SMART pld_4 328 363 IPR001736 GO:0003824
Vvi18g158 823 SMART pld_4 669 696 IPR001736 GO:0003824
Vvi18g158 823 CDD C2_plant_PLD 9 131 - -
Vvi18g158 823 PIRSF PLD_plant 131 823 IPR011402 GO:0004630|GO:0005509|GO:0016020|GO:0046470
Vvi18g158 823 PIRSF PLD_plant 1 136 IPR011402 GO:0004630|GO:0005509|GO:0016020|GO:0046470
Vvi18g158 823 Pfam C2 domain 13 133 IPR000008 -
Vvi18g158 823 SUPERFAMILY Phospholipase D/nuclease 500 751 - -
Vvi18g158 823 Pfam PLD-like domain 525 706 IPR025202 -
Vvi18g158 823 Pfam Phospholipase D Active site motif 329 363 IPR001736 GO:0003824
Vvi18g158 823 PANTHER PHOSPHOLIPASE D 7 132 - -
Vvi18g158 823 PANTHER PHOSPHOLIPASE D 134 822 - -
Vvi18g158 823 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 328 363 IPR001736 GO:0003824
Vvi18g158 823 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 11 152 IPR035892 -
Vvi18g158 823 PANTHER PHOSPHOLIPASE D 7 132 IPR015679 -
Vvi18g158 823 Gene3D Endonuclease Chain A 173 442 - -
Vvi18g158 823 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 669 696 IPR001736 GO:0003824
Vvi18g158 823 PANTHER PHOSPHOLIPASE D 134 822 IPR015679 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g158 K01115 - vvi:100241982 1593.17