Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1580 ATGGAGTCCCGGGATCGCCCTTCCTCTTCTCGCCGGCCCTCTAAAAGGGTCCGCATTACTGCAACCCTGCCCCATATTCCAGACGAAATCATTCTGGAGATTCTGTGTCTTCTTCCTGTGAAGTCCCTGATGCGGTTCAAATGCGTTTCCAAATCATGGCGTGAGATGATCTCCGATCCCGATTTCGAGAAGAAGCAACTCGCAGTTGCGGCACGAGACTCTGGTGAGGTCTATAACTCGAGGCTTATTATGCATTATCCTTCTATGAAGCTTAAATCTTGCCCTTTATCTTGCCTGTTCTATGAGCCTGTTGGGCATTCTGTGAATCATGAGTATCCGGAAAATGATATAATCTTTGTGTGGAATCCATCGACTAGGGAATTTAGAAGATTGCCTCCCATTTCTTTTATGCAGTGTTTTCATTTGGTGGCGTATGGATTTGGGTATGACAGCATTGCCGATGACTATAAGGTTACGAGAGTGGGTTGCTACTGTATTGGGCGCTATTATGAATATCAAGTCAGGGTTTTTTCATTGAGAGGTAATGTTTGGAGAAAAATTGAGAATTTTCCCTGCTATCTTTTCACTGATGAACCAGGGATACATGTGAATGGTTCAATCAATTTCGGGGGAGTTGGGGACAGTGAAAATTACTACTGGAGTGTAGTTGGACTTGATTTAGCAAGTGAATCTTATCGGATGGTGCCGCTGCCTGATTGTGCAGATCCAAATGTGAAACCAATGATTATGGCTTTAGGAGGACGGTTTTGCACTATTTTTGATAATGACGAGGCTGTTGATGTGTGGGTAATGGAGCAATATGGGGTGAAGAAGTCCTGGAATAAATTGGTTACTGTACCTTATTTCCCGGACCCAATGACTGTTGATTGTACAAAGCCAGTGTTCTTTTTGCGAGACGGAGCAATTCTAATGGAATTCTATGGGTTGTTAGTTTTGTACAATATCGATAGAGATGAATCAACGATTCCTACAATCTATGGGACTCGTCATTGTCATGAGGTAGAAGTCTACCTGGAGACCATAGTTTCACCCAATGCCTACTATAGACTGCAAGCTGGCCATCAAAATGGAGGAATAGGAAGACAAGGTATATCCTGA 1119 43.34 MESRDRPSSSRRPSKRVRITATLPHIPDEIILEILCLLPVKSLMRFKCVSKSWREMISDPDFEKKQLAVAARDSGEVYNSRLIMHYPSMKLKSCPLSCLFYEPVGHSVNHEYPENDIIFVWNPSTREFRRLPPISFMQCFHLVAYGFGYDSIADDYKVTRVGCYCIGRYYEYQVRVFSLRGNVWRKIENFPCYLFTDEPGIHVNGSINFGGVGDSENYYWSVVGLDLASESYRMVPLPDCADPNVKPMIMALGGRFCTIFDNDEAVDVWVMEQYGVKKSWNKLVTVPYFPDPMTVDCTKPVFFLRDGAILMEFYGLLVLYNIDRDESTIPTIYGTRHCHEVEVYLETIVSPNAYYRLQAGHQNGGIGRQGIS* 373
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 25645180 25647652 - Vvi18g1580 Vvi18g1580 781283

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1580 372 SMART fbox_2 26 66 IPR001810 GO:0005515
Vvi18g1580 372 Pfam F-box domain 25 62 IPR001810 GO:0005515
Vvi18g1580 372 PANTHER OS02G0783600 PROTEIN 18 331 - -
Vvi18g1580 372 TIGRFAM F_box_assoc_1: F-box protein interaction domain 117 314 IPR017451 -
Vvi18g1580 372 ProSiteProfiles F-box domain profile. 20 67 IPR001810 GO:0005515
Vvi18g1580 372 SUPERFAMILY F-box domain 23 72 IPR036047 GO:0005515
Vvi18g1580 372 Gene3D - 6 62 - -
Vvi18g1580 372 SUPERFAMILY Galactose oxidase, central domain 118 326 IPR011043 -
Vvi18g1580 372 Pfam F-box associated domain 200 289 IPR013187 -
Vvi18g1580 372 PANTHER F-BOX PROTEIN CPR30-LIKE 18 331 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1580 - - - vvi:100267195 755.747
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1580 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010552 1 2 1 1 0 1 0 1 1 1 1 1 0 1 1 0 1 3 0 1 1 0 1 1 1 1 1 1 1 2 28