Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1582 ATGCCTAAACGTAATGTTGTTTCTTGGAACTCCTTGATTTCTGGGTATACACAGATGGGTTTCTATCATGAGGTTATGAACCTGTTTAAGGAAGCGAGAATGTCCGATTTAAGGCTTGATAAATTCACTTTCTCAAATGCTTTGAGCGTTTGTGGACGAACTCTGGATTTGAGATTGGGTAGGTTGATACATGCCTTGATTACTGTCAGTGGGTTGGGTGGTCCAGTTCTTTTGACCAATTCACTTATTGATATGTATTGCAAGTGTGGCCGGATTGATTGGGCAAGGCTGGTGTTTGAGAGTGCAGATGAATTAGATTCTGTCTCCTGGAACTCCTTGATTGCAGGTTATGTTCGAATTGGCTCAAATGATGAAATGTTGAGACTTCTTGTGAAAATGCTTCGGCATGGACTGAATTTGAATAGTTATGCATTAGGAAGTGCCCTGAAGGCATGTGGCTCAAACTTTAGTTCTTCAATAGAATGTGGGAAAATGCTTCACGGGTGTGCAGTCAAACTTGGGTTGGATTTGGATGTTGTTGTTGGAACTGCATTGCTTGATACATATGCAAAAATTGGAGATTTAGAAGATGCAACCAAAATTTTCAAGCTCATGCCTGATCCAAATGTTGTCATGTATAATGCCATGATTGCTGGATTCCTGCAAATGGAGACTATGGCTGATGAATTTGCAAATGAAGCCATGTATCTTTTCTTTGAGATGCAAAGTCGAGGAATGAAGCCCTCTGAGTTTACATTCTCGAGCATACTCAAAGCTTGTAGCACCATTGAAGCATTTGAGTGCGGAAAGCAAATTCATGCTCAAATCTTTAAATACAATCTTCAGTCTGATGAGTTCATTGGAAATGCACTTGTTGAGCTGTATTCATTGTCAGGTTCAATTGAGGATGGCCTAAAATGTTTTCATTCAACTCCCAAGCTAGATGTTGTTTCATGGACATCCCTTATTGTGGGTCATGTTCAAAATGGACAATTTGAGGGTGGACTGACTCTGTTCCATGAATTGCTGTTCTCTGGAAGAAAACCGGATGAGTTCACAATATCAATCATGTTGAGTGCTTGTGCAAATTTGGCAGCAGTAAAGTCTGGTGAGCAGATCCATGCCTATGCAATAAAAACTGGAATCGGAAACTTCACCATCATTCAAAATTCACAGATTTGCATGTATGCCAAATGTGGAGACATAGATTCTGCTAATATGACCTTTAAAGAGACAAAGAATCCCGACATAGTGTCATGGTCTGTGATGATTTCTAGCAATGCACAACATGGATGTGCAAAAGAAGCTGTGGACCTCTTTGAATTGATGAAGGGTTCTGGGATTGCACCTAACCACATTACTTTTCTTGGAGTTCTTGTTGCATGTAGTCATGGGGGACTTGTAGAAGAAGGATTACGATATTTTGAAATCATGAAGAAAGATCATGGCATAACGCCAAATGTAAAGCATTCTGCCTGCATTGTGGACCTTCTGGGTCGAGCTGGAAGACTAGCCGAGGCAGAAAGCTTCATTATGGACTCAGGCTTTGAGGGCGATCCAGTAATGTGGCGATCTTTATTGAGTGCTTGCAGGGTCCATAAGGCCACTGACACTGGGAAACGTGTTGCAGAGAGAGTAATTGAGCTTGAACCTGAAGCTGCTGCATCATATGTGCTTCTTTACAACATCTACAATGATGCTGGAATACAAATGCCAGCCACAGAAATCAGGAACTTGATGAAAGATCGAGGAGTTAAAAAAGAACCTGGTCTAAGTTGGATTGAGGTTGGAAACGTGGTTCATTCCTTTGTGGCGGGTGATAGGTCTCACCCTAATAGTCAAGTCATTTATGTGCAATTGGAGGAAATGTTGGAGGAGATAAAGAAATTAGATTATATTGATGAGAAGCTTGTTTCTGATGCCTCAGAACCAAAGCACAAGGACAACTCAATGGTCAGCTACCATAGTGAAAAGTTAGCTGTGACTTTTGGGATAATTAGTTTACCAAGATCAGCTCCTGTGAGAGTAATGAAGAACTTGAGAAGCTGTTGGCATTGTCATGAAACAATGAAGCTCTTCTCAAGGTTGGAAAATAGGGAGATAATTCTTAGGGATCCAATTCGTTTCCATCGCTTCAGAGATGGTTCTTGTTCTTGTGGAGACTACTGGTAA 2172 40.98 MPKRNVVSWNSLISGYTQMGFYHEVMNLFKEARMSDLRLDKFTFSNALSVCGRTLDLRLGRLIHALITVSGLGGPVLLTNSLIDMYCKCGRIDWARLVFESADELDSVSWNSLIAGYVRIGSNDEMLRLLVKMLRHGLNLNSYALGSALKACGSNFSSSIECGKMLHGCAVKLGLDLDVVVGTALLDTYAKIGDLEDATKIFKLMPDPNVVMYNAMIAGFLQMETMADEFANEAMYLFFEMQSRGMKPSEFTFSSILKACSTIEAFECGKQIHAQIFKYNLQSDEFIGNALVELYSLSGSIEDGLKCFHSTPKLDVVSWTSLIVGHVQNGQFEGGLTLFHELLFSGRKPDEFTISIMLSACANLAAVKSGEQIHAYAIKTGIGNFTIIQNSQICMYAKCGDIDSANMTFKETKNPDIVSWSVMISSNAQHGCAKEAVDLFELMKGSGIAPNHITFLGVLVACSHGGLVEEGLRYFEIMKKDHGITPNVKHSACIVDLLGRAGRLAEAESFIMDSGFEGDPVMWRSLLSACRVHKATDTGKRVAERVIELEPEAAASYVLLYNIYNDAGIQMPATEIRNLMKDRGVKKEPGLSWIEVGNVVHSFVAGDRSHPNSQVIYVQLEEMLEEIKKLDYIDEKLVSDASEPKHKDNSMVSYHSEKLAVTFGIISLPRSAPVRVMKNLRSCWHCHETMKLFSRLENREIILRDPIRFHRFRDGSCSCGDYW* 724
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 25669727 25672223 + Vvi18g1582 Vvi18g1582 781285

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1582 723 PANTHER OS01G0959600 PROTEIN 206 717 - -
Vvi18g1582 723 PANTHER OS01G0959600 PROTEIN 1 104 - -
Vvi18g1582 723 PANTHER OS01G0959600 PROTEIN 99 204 - -
Vvi18g1582 723 Gene3D Tetratricopeptide repeat domain 1 59 IPR011990 GO:0005515
Vvi18g1582 723 Gene3D Tetratricopeptide repeat domain 61 158 IPR011990 GO:0005515
Vvi18g1582 723 Gene3D Tetratricopeptide repeat domain 159 228 IPR011990 GO:0005515
Vvi18g1582 723 Gene3D Tetratricopeptide repeat domain 229 386 IPR011990 GO:0005515
Vvi18g1582 723 Gene3D Tetratricopeptide repeat domain 387 616 IPR011990 GO:0005515
Vvi18g1582 723 TIGRFAM PPR: pentatricopeptide repeat domain 418 451 IPR002885 -
Vvi18g1582 723 TIGRFAM PPR: pentatricopeptide repeat domain 317 351 IPR002885 -
Vvi18g1582 723 TIGRFAM PPR: pentatricopeptide repeat domain 108 141 IPR002885 -
Vvi18g1582 723 TIGRFAM PPR: pentatricopeptide repeat domain 7 40 IPR002885 -
Vvi18g1582 723 Pfam PPR repeat family 208 260 IPR002885 -
Vvi18g1582 723 Pfam PPR repeat family 315 363 IPR002885 -
Vvi18g1582 723 Pfam PPR repeat family 415 462 IPR002885 -
Vvi18g1582 723 Pfam DYW family of nucleic acid deaminases 647 723 IPR032867 GO:0008270
Vvi18g1582 723 Pfam E motif 536 595 IPR046848 -
Vvi18g1582 723 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 106 140 IPR002885 -
Vvi18g1582 723 PANTHER OS07G0578800 PROTEIN-RELATED 206 717 IPR045215 GO:0003723|GO:0009451
Vvi18g1582 723 PANTHER OS07G0578800 PROTEIN-RELATED 99 204 IPR045215 GO:0003723|GO:0009451
Vvi18g1582 723 PANTHER OS07G0578800 PROTEIN-RELATED 1 104 IPR045215 GO:0003723|GO:0009451
Vvi18g1582 723 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 5 39 IPR002885 -
Vvi18g1582 723 Pfam PPR repeat 183 206 IPR002885 -
Vvi18g1582 723 Pfam PPR repeat 108 138 IPR002885 -
Vvi18g1582 723 Pfam PPR repeat 80 100 IPR002885 -
Vvi18g1582 723 Pfam PPR repeat 7 33 IPR002885 -
Vvi18g1582 723 Pfam E+ motif 600 627 IPR046849 -
Vvi18g1582 723 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 315 349 IPR002885 -
Vvi18g1582 723 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 416 450 IPR002885 -
Vvi18g1582 723 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 178 212 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1582 - - - vvi:100244885 1443.71
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1582 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006907 1 4 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 2 1 1 0 1 0 1 32