Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1586 ATGTTTTTTCGAGGAAGTGGAAAGAAAAGGAAAAAGGGAGCGGGACAACGCCGGTCCTCACTCTTGGGGAGCAAAATTTTCCAACTTCTATTAGAAGTCTTATTCAAAACAAGGAAAAGTCTTGATATTTTCTTCAATGATTCTACTGAGAATGATTTCCTCTTAACGGATTCACAGATAACTCAGGATGCCATCCAAGTTACATATGATGTTTCTGGAAATCCTATTACAAATTTGTCTGGCCAGGCCCTGTATAAAAGGCCATTCAAGCTGTGGAGTGAAAGCAAAGGCACAGCATCCTTCAATACGACCTTTGTGCTCAGAATCACTCCGAGGACAGATCCAGGTGGTGAAGGCTTGGTCTTTATCTTAACTGGACGTGCCACTCGTCCAGAGAACAGTGAAGGGAAATGGCTTGGGATTGTGAATGCAAGCACAAATGGATCAGCTCAAAACCAGATAGTGGCAGTAGAATTTGACACAAGGAAAAGCTACATGGAGGACCTGAGCAACAACCACATTGGCGTGAACGTGAACAGCGTCTACTCAATCAAACAAGCGAACCTAAGCATCAATCTTTCAAGTGGCACCGATATAACAGTGAAGATTCAATATGATGGGAAAAATTTGAGTGCCTTTGTTGGAACGCAGATGAAGGCTCCAGCAATCGCTCTTCCTATTAACCTCTCAGACCATCTGCCACAGAATGTTTTTGTGGGATTCTCGGCTTCAACAGGGAATCACACTCAACTGAACTGTGTAAGGTCATGGGAATTCAGTGGTTCGAGTAATCCAATCACACTGAATTGGGAAACAAGATATGGAATCATTTGCGGGGTGGCTCAGGCATTGGACTATCTTCACAATGGATGCGAGAAGAGGGTGCTTCACCGAGACATAAAAGCGAGCAATATAATGTTGGATTCAGATTTCAACGCCCGATTGGGGGATTTTGGATTGGCTAGAATTATTCAACTGAATGATCAAACTCACCACTCAACAAAAGAGATTGCAGGGACACCTGGGTATATGGCTCCAGAAAGTTTTCATACCGGTAGGGCTGCCGTTGAAACTGATGTATATGCCTTCGGTGTTCTTGTACTGGAAGTTGTCTGTGGAAGAAAGCCTGGAGATCAAAGCGTGAACAACAAATACAACAACGGGATAGTGGATTGGGTATGGGAATACTATAGGAGACAAAGGATTCTGGATGTCGTAGATTTGCGACTGAATGGGCTTTTCTTCAGTTCTCTGCGTCTTTGTATTCAGTTGATTAACAGCATGTTAGGTACAAGTCATTTTACATACTTTTCCCCAGTGGTTTTTGAGTCTCTACTTCTAGCACTTCTCTTGGTTGGTTCTTTTAGTCCAGTTAAATGTTTCTATTTCAATTATCCATTGTTCAATGATTCTACTGAGAATGATTTCCAATTAATGCGTTCAGAGATAGCTGTGGATGCCATCCATGTTTCTGGAAGTCCGATTCCAAATTTGTCTGGCCAGGCCTTGTATGCCATTCAAGCTAATCCAATCACACTGAATTGGGAAACAAGATATGGAATCATTTGCGGGGTGGCTCAGGCATTGGACTATCTTCACAATGGATGCGAGAAGAGGGTGCTTCACCGAGACATAAAAGCGAGCAATATAATGTTGGATTCAGATTTCAACGCCCGGTTGGGGGATTTTGGATTGGCTAGAACTATTCAACTGAGTGATCAAACTCACCACTCAACAAAAGAGATTGCAGGGACACCTCGGTATATGGCTCCAGAAAGTTTTCATACTGGTAGGGCTGCCGTTGAAACCGATGTATATGCCTTCGGTGTTCTTGTACTGGAAGTTGTCTGTGGAAGAAAGCCTGGAGATCAAAGCGTGAACAACAAATACAACGGGATAGTGGATTGGGTATGGGAATACTATAGGAGACAAAGGATTCTGGATGTCGTAGATTTGCGACTGAACGGGGTTTCCCACAAGGAGCAGACTGAATACGCACTGATGTTGGCATTGTCCTGTTGTCATCCCAATCCGTACCAGAGGCCGTCCATGAGAATTGCTTTAAGGGTTCTCACAGGAGAGGTAGACCCACCAGTTATCCCCATTGAAAAACCTCCTTTTGTGTGGCCAGCCACACCTCCGGTCTCTTTCAGGGAGGATTTGGAGTATCCTCCCACAGGAGGCCTGCTCTCTCCACCTTCAGAACTAATTGGGAGATAA 2220 44.05 MFFRGSGKKRKKGAGQRRSSLLGSKIFQLLLEVLFKTRKSLDIFFNDSTENDFLLTDSQITQDAIQVTYDVSGNPITNLSGQALYKRPFKLWSESKGTASFNTTFVLRITPRTDPGGEGLVFILTGRATRPENSEGKWLGIVNASTNGSAQNQIVAVEFDTRKSYMEDLSNNHIGVNVNSVYSIKQANLSINLSSGTDITVKIQYDGKNLSAFVGTQMKAPAIALPINLSDHLPQNVFVGFSASTGNHTQLNCVRSWEFSGSSNPITLNWETRYGIICGVAQALDYLHNGCEKRVLHRDIKASNIMLDSDFNARLGDFGLARIIQLNDQTHHSTKEIAGTPGYMAPESFHTGRAAVETDVYAFGVLVLEVVCGRKPGDQSVNNKYNNGIVDWVWEYYRRQRILDVVDLRLNGLFFSSLRLCIQLINSMLGTSHFTYFSPVVFESLLLALLLVGSFSPVKCFYFNYPLFNDSTENDFQLMRSEIAVDAIHVSGSPIPNLSGQALYAIQANPITLNWETRYGIICGVAQALDYLHNGCEKRVLHRDIKASNIMLDSDFNARLGDFGLARTIQLSDQTHHSTKEIAGTPRYMAPESFHTGRAAVETDVYAFGVLVLEVVCGRKPGDQSVNNKYNGIVDWVWEYYRRQRILDVVDLRLNGVSHKEQTEYALMLALSCCHPNPYQRPSMRIALRVLTGEVDPPVIPIEKPPFVWPATPPVSFREDLEYPPTGGLLSPPSELIGR* 740
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 25797006 25807616 + Vvi18g1586 Vvi18g1586 781289

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1586 739 ProSiteProfiles Protein kinase domain profile. 379 700 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi18g1586 739 SUPERFAMILY Protein kinase-like (PK-like) 264 429 IPR011009 -
Vvi18g1586 739 SMART serkin_6 444 691 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi18g1586 739 Pfam Legume lectin domain 48 263 IPR001220 GO:0030246
Vvi18g1586 739 SUPERFAMILY Protein kinase-like (PK-like) 501 725 IPR011009 -
Vvi18g1586 739 ProSitePatterns Legume lectins beta-chain signature. 155 161 IPR019825 -
Vvi18g1586 739 PANTHER BINDING PROTEIN, PUTATIVE-RELATED 49 262 - -
Vvi18g1586 739 PANTHER BINDING PROTEIN, PUTATIVE-RELATED 264 422 - -
Vvi18g1586 739 PANTHER BINDING PROTEIN, PUTATIVE-RELATED 507 716 - -
Vvi18g1586 739 Gene3D Transferase(Phosphotransferase) domain 1 261 433 - -
Vvi18g1586 739 Gene3D Transferase(Phosphotransferase) domain 1 502 696 - -
Vvi18g1586 739 SUPERFAMILY Concanavalin A-like lectins/glucanases 44 260 IPR013320 -
Vvi18g1586 739 Pfam Protein kinase domain 276 390 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi18g1586 739 Pfam Protein kinase domain 520 688 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi18g1586 739 ProSitePatterns Serine/Threonine protein kinases active-site signature. 540 552 IPR008271 GO:0004672|GO:0006468
Vvi18g1586 739 CDD lectin_legume_LecRK_Arcelin_ConA 44 262 IPR001220 GO:0030246
Vvi18g1586 739 Gene3D - 43 260 - -
Vvi18g1586 739 PANTHER - 507 716 - -
Vvi18g1586 739 PANTHER - 49 262 - -
Vvi18g1586 739 PANTHER - 264 422 - -
Vvi18g1586 739 ProSiteProfiles Protein kinase domain profile. 107 393 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1586 - - - vvi:104882780 467.233
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1586 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Sed10g2129 . . . . . . . . Bhi06g00241 Tan10g2041 Cmetu09g0848 . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001105 1 2 0 0 1 3 1 0 3 2 2 2 2 2 3 2 3 2 2 3 2 2 2 3 3 3 3 9 0 5 68
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76359 PF00139 Lectin_legB 1.70E-56 CL0004 Vvi PK