Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1589 ATGCTAGGTATAAGTCATTTTACATACTTTTCCCCAGTGGTTGTTGAGTCTCTACTTCTAGCACTTCTCCTGGTTGGTTCTTTTAGTCCAGTTGAATGTTTCCATTTCAATTATCCATTGTTCAATGACTCTACTGAGAATGATTTCCACTTAATGCGTTCAGAGATAGCTGTGGATGCCATCCATGTTACACCTGATTTTTCTGGAAGTCCTATCACAAATTTTTCTGGCCAGGCCCTGTATAAAAGGTCATTCAAGCTGTGGAGTGAAAGCAAAGGCACAGCATCCTTCAATACGACCTTTGTGCTCAGAATCACTCCGAGGACAGATCCAGGTGGTGAAGGCTTGGCCTTTATCTTAACTGGACGTGCCACTCTTCCAGAGAACAGTGAAGGGAAATGGCTTGGGATCGTGAATGCAAGCACAAATGGATCAGCTGAAAACCAGATAGTGGCAGTAGAATTTGACACAAGGAAAAGCTACATGGAGGACCTGAGCAATAACCACATTGGCGTGAACGTGAACAGCGTCTACTCAATCAAACAGGCGAACCTAAGCATCAATCTTTCAAGTGGCACCGCTATAACAGTGAAGGTTCAATATGATGGGAAAATTTTGAGGGCATTTGTTGGAACGCAGATGAAGGCTCCAGCAATCGCTCTTCCTATTAACCTCTCAGACCATCTGCCACAGAAAGTTTTTGTGGGATTCTCGGCTTCAACAGGGAATCACACTCAACTCAACTGTGTAAGGTCATGGGAATTCAGTGGTTCGAGTGTAGATGAAGATCCTGACCTATTATGGGTCTGGATCATGGTTCCAGTAACAGTTTTGGTTAGTGGGGTCGCCTTCTATTTCTCTTGGAAATGGAATTGTGGAAAGCAGGAGGAAGAGGAGGATGATCCGAGGAATCGAATCACACTGAATTGGGAAACAAGATATCTAATCATTTGCGGGGTGGCTCAGGCATTGGATTATCTTCACAATGGATGCGAGAAGAGGGTGCTTCACCGAGACATAAAAGCAAGCAATATAATGTTGGATTCAGATTTCAACGCCCGGTTGGGGGATTTTGGATTGGCAAGAATCATTCAACTGAGTGATCAAACTCACCACTCAACAAAAGAGATTGCAGGGACACCTGGGTATATGGCTCCAGAAAGTTTTCATACTGGTAGGGCTGCCGTTGAAACCGATGTATATGCCTTCGGTATTCTTGTACTGGAAGTTGTCTGTGGAAGAAAGCCTGGAGATCAAAGCTTGAACAACAAATACAACAACGGGATAGTGGATTGGGTATGGGAATACTATAGGAGACAAAGAATTCTGGATGTCTTAGATTTGCGACTGAATGGGGTTTTCCACAAGGAGCAGACTGAATATGCACTGATGTTGGCATTGTCCTGTTGTCATCCCAACCCGTACCAGAGGCCATCCATGAGAATTGCTTTAAGGGTTCTTACAGGAGAGGTAGACCCACCAGTTATCCCCATTGAAAAACCTCCTTTTGTGTGGCCGGCCACACCTCCGGACTCTTTCAGGGAGGATTTGGAGTATCCTCCCACAGGGGGCCTGCTCTCTCCACCTTCAGAACTCATTGGGAGATAA 1608 45.02 MLGISHFTYFSPVVVESLLLALLLVGSFSPVECFHFNYPLFNDSTENDFHLMRSEIAVDAIHVTPDFSGSPITNFSGQALYKRSFKLWSESKGTASFNTTFVLRITPRTDPGGEGLAFILTGRATLPENSEGKWLGIVNASTNGSAENQIVAVEFDTRKSYMEDLSNNHIGVNVNSVYSIKQANLSINLSSGTAITVKVQYDGKILRAFVGTQMKAPAIALPINLSDHLPQKVFVGFSASTGNHTQLNCVRSWEFSGSSVDEDPDLLWVWIMVPVTVLVSGVAFYFSWKWNCGKQEEEEDDPRNRITLNWETRYLIICGVAQALDYLHNGCEKRVLHRDIKASNIMLDSDFNARLGDFGLARIIQLSDQTHHSTKEIAGTPGYMAPESFHTGRAAVETDVYAFGILVLEVVCGRKPGDQSLNNKYNNGIVDWVWEYYRRQRILDVLDLRLNGVFHKEQTEYALMLALSCCHPNPYQRPSMRIALRVLTGEVDPPVIPIEKPPFVWPATPPDSFREDLEYPPTGGLLSPPSELIGR* 536
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 25830694 25832659 + Vvi18g1589 Vvi18g1589 781292

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1589 535 ProSitePatterns Legume lectins beta-chain signature. 151 157 IPR019825 -
Vvi18g1589 535 SMART serkin_6 178 487 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi18g1589 535 Gene3D - 32 265 - -
Vvi18g1589 535 Gene3D Transferase(Phosphotransferase) domain 1 298 492 - -
Vvi18g1589 535 PANTHER BINDING PROTEIN, PUTATIVE-RELATED 14 300 - -
Vvi18g1589 535 PANTHER BINDING PROTEIN, PUTATIVE-RELATED 302 514 - -
Vvi18g1589 535 MobiDBLite consensus disorder prediction 516 535 - -
Vvi18g1589 535 CDD lectin_legume_LecRK_Arcelin_ConA 34 258 IPR001220 GO:0030246
Vvi18g1589 535 Pfam Legume lectin domain 35 262 IPR001220 GO:0030246
Vvi18g1589 535 SUPERFAMILY Protein kinase-like (PK-like) 303 522 IPR011009 -
Vvi18g1589 535 ProSiteProfiles Protein kinase domain profile. 103 496 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi18g1589 535 PANTHER - 302 514 - -
Vvi18g1589 535 PANTHER - 14 300 - -
Vvi18g1589 535 Pfam Protein kinase domain 313 484 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi18g1589 535 ProSitePatterns Serine/Threonine protein kinases active-site signature. 335 347 IPR008271 GO:0004672|GO:0006468
Vvi18g1589 535 SUPERFAMILY Concanavalin A-like lectins/glucanases 32 257 IPR013320 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1589 - - - vvi:104882780 552.362
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1589 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001105 1 2 0 0 1 3 1 0 3 2 2 2 2 2 3 2 3 2 2 3 2 2 2 3 3 3 3 9 0 5 68
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76360 PF00139 Lectin_legB 7.70E-58 CL0004 Vvi PK