Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1596 ATGAAGTCGACAAGTAAAATAATGTTTAAAAATAATTTAAAACTTAATGATTTTAACAGTATTATGTGCTTTGGGGTGGTGCATTCCACTTATCGATTGAGGTCATCTTCCTTGTTTGTTTTTGATCTTTTACATGTCTACTCAAAGAGAGAGAGAGAGAGAGGGAGAGAGCAAATGGCTTGCTTTGCAAATCTACCAATGATTTCAAGCCCAAACCCCAACCCTAATCCTAATCTTAAAGCCTCTGCTTCTCTCTCTCAATCATCAATCTCCACCAAGCTTCATTTTTCTTCACAATTCTCATCTCTCTCCCCTTCTCCCCTCTCGCTTCGCTGCAATCAAACCCTAATACTACGTCGTTTCGGAGGCCGCGCTCCCAGCGTATCTCCAACTCTCGTGGTAGTGGCATCTGCTAATCCCAATTCTCTGAAGATTATGATATCCGGTGCTCCTGCTTCTGGTAAAGGGACACAATGCGAGCTCATCACTAAAAAGCATGATTTGGTGCATATTGCTGCTGGAGATTTATTGAGGGCAGAAGTTGCAGCTGGTAGTGAAAATGGGAGGCGAGCGAAGGAGTTCATGGAAAAAGGGAAGCTAGTGCCAAATGAAATAGTTGTCATGATGGTTAGGGACCGTCTATTGCAGCCTGATTCTCAAGAAAAGGGATGGCTTTTAGATGGATACCCTAGGAGCCAATCTCAAGCTACTGCTCTCAAGGAATTTGGGTTTGAGCCTGACCTTTTCATTCTCCTAGAAGTCCCTGAAGAAATTCTGGTCGAAAGAGTGGTTGGAAGGAGGCTAGATCCTGTCACTGGGAGGATATACCACTTGAAGTATTCTCCCCCTGAGAATGAAGAAATTGCTGCTAGGCTTACTCAACGCTTTGATGATACTGAGGAAAAGGTAAAGTTACGATTGCGTACTCATCATCAAAATGTGGAGGCAGTACTTTCATTGTACAAAGACATAACAATCAAGGTCAATGGAGGTGTTTCAAAAGAAGAAGTGTTTGCCCAAATTGACAGTGCTCTGGAAAAACTTGTCAAGCAAAAGAAGGCTACTGCAGGACCTGTAGCAATATAG 1086 42.82 MKSTSKIMFKNNLKLNDFNSIMCFGVVHSTYRLRSSSLFVFDLLHVYSKRERERGREQMACFANLPMISSPNPNPNPNLKASASLSQSSISTKLHFSSQFSSLSPSPLSLRCNQTLILRRFGGRAPSVSPTLVVVASANPNSLKIMISGAPASGKGTQCELITKKHDLVHIAAGDLLRAEVAAGSENGRRAKEFMEKGKLVPNEIVVMMVRDRLLQPDSQEKGWLLDGYPRSQSQATALKEFGFEPDLFILLEVPEEILVERVVGRRLDPVTGRIYHLKYSPPENEEIAARLTQRFDDTEEKVKLRLRTHHQNVEAVLSLYKDITIKVNGGVSKEEVFAQIDSALEKLVKQKKATAGPVAI* 362
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 25905323 25934916 + Vvi18g1596 Vvi18g1596 781299

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1596 361 Gene3D - 140 358 IPR027417 -
Vvi18g1596 361 ProSitePatterns Adenylate kinase signature. 224 235 IPR033690 -
Vvi18g1596 361 PANTHER NUCLEOTIDE KINASE 94 352 IPR000850 GO:0005524|GO:0006139|GO:0019205
Vvi18g1596 361 TIGRFAM adk: adenylate kinase 144 345 IPR006259 GO:0004017|GO:0005524|GO:0016776
Vvi18g1596 361 CDD ADK 144 337 IPR000850 GO:0005524|GO:0006139|GO:0019205
Vvi18g1596 361 PANTHER ADENYLATE KINASE 8 94 352 - -
Vvi18g1596 361 Pfam Adenylate kinase 147 323 - -
Vvi18g1596 361 SUPERFAMILY Microbial and mitochondrial ADK, insert "zinc finger" domain 265 295 IPR036193 GO:0004017
Vvi18g1596 361 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 141 351 IPR027417 -
Vvi18g1596 361 Hamap Adenylate kinase [adk]. 143 346 IPR000850 GO:0005524|GO:0006139|GO:0019205
Vvi18g1596 361 PRINTS Adenylate kinase signature 146 159 IPR000850 GO:0005524|GO:0006139|GO:0019205
Vvi18g1596 361 PRINTS Adenylate kinase signature 174 188 IPR000850 GO:0005524|GO:0006139|GO:0019205
Vvi18g1596 361 PRINTS Adenylate kinase signature 224 240 IPR000850 GO:0005524|GO:0006139|GO:0019205
Vvi18g1596 361 PRINTS Adenylate kinase signature 295 310 IPR000850 GO:0005524|GO:0006139|GO:0019205
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1596 K00939 adk, AK; adenylate kinase [EC:2.7.4.3] - vvi:100853175 548.125
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1596 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009872 1 1 1 1 0 1 2 1 1 0 1 1 2 1 1 2 0 1 2 1 1 1 1 1 1 1 1 3 1 1 33