Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1597 ATGGCTAAAAAACAACATTTCCTCAAAGCATTTTATTATCACTTCCACTGCTCAACAACACGGGTATCTTCTATGGCTTCTCCCTCTAAGTTCTTGCTTCTCCTCACCCTCTCTTGCCTCACTTGTCTTCCATTCATTTCTTCCCTCTCCTCTGTCTCAATATCTGAGACCTCTAACCAGACACTCATCTGTGCGTTACTGGAGTCCTCTCGTCTCAACTGTACTAGCTTTCCCACCGGAATTCAGATTCCCAGTGTTAATAGATCATTTTCCGGGATTGTGGCTGGAGACGGTTTCCAATGTGTTTTAAGTTTCCCCTCCGCTACAATCATGCTCTGCTATAGGTTCTCTGCTAATGGTACTAATATGCACTCTAAACGACTCTACTACAACGACTCAGCTCTCACTGAAGTTGCTGCAGGAAACACCCATGTTTGCGGCCTTGTCAATGGTACTAATATCCTTCACTGCTGGCAATGGCGAGGTTTCAATACCAGCGTACAGTCAGACTTTTCGGGTATTGCCGTGGGAGAGGGTTTCGTATGTGGGTTATCCAGCAGCGGAAGGATTACATGCATAGGAACTAATTCCAGTTCTAGTTCTACCATCCGCGATCGTGTGCCTAGTGGGAGCTTTCAGAAGGTTGCGGCAGGGTTCCGCCACGCTTGTGCCATCTATAGGAATCAAAGTTTGGTTTGTTGGGGAGAGACGGTTGGTGAGGAACCACAGGGTGAGTTCGTGTCACTGGCCTTGGGAGAGAATCGGAGCTGTGCTATGAGGGGGAATGGAACAGTTGTTTGTTGGGGGGAGAATGGTTTCAGTTTGCCGGAGAGTTTGCGAGAGACGGTTTTTATGACGATTGAAGCAAAGCGCAGTGTTTTCTGTGGAGTGGACCAATATAACTTTTCATTGCTGTGTTGGGGGAATGAGATCTTTGACTCAAATTCTATGGTTTTCCCGAAGGTATTGCCAGGCTCATGTACAAGCAGTGAATGTCCGAATGGTGTAGTGCCAGGTTCCGGCAGCATGTGTGGACGAGGACATATCTGCAACGCTTACCAGAACCGAACCTTGGTAGAAGGTCCATCACAACCTCCATCACCGCCTCCAGAAGTGCGGAACAGAAGTGGTTGGAATGATAAAATGGTCGCCTTTCTGGTGGTGGGGTGTGTTGGGTCGGCCTCGTTTTTGGCTGTCATTTGTTTCTTTCTATTCCGCCAACGACAGACAGTACAAGCTCAGCGGGCAGCACCTGTCTTAGAGAAGCGGCTGAGCCAGTTGGTTAGCTTAGGAAATGGGGGTCGCTTGGAGGAATTCTCTCTGCAAGAGCTACGCCAAGCTACAAATGATTTCTCACAGGAACACAGAATCGGAACAGGTAGCTTTGGCTGTGTCTACCGTGCCACCCTGGAGGATGGGAAAGAAGTTGCCATCAAGCGAGCTGAAGTATCAACTACTTCATCAAATGCAGTTGGCACCAGACGCCAGGAAGACAAGGACACTGCCTTCGTTAGTGAGCTAGATTCTCTGTCCCGACTCAATCATCGAAACCTTGTCCGACTATTAGGATATTGCGAAGACTACAATGAGAAGATACCAGCCTACGAGCGCATCCTAGATGAGGATTCACACCTTTCTCTCCATGCCGCTGGCACAGTTGGCTACATGGATCCCGAGTACTATAGGCTTCAACAGTTGACCCCTAAGAGTGATGTGTATAGCTTTGGAGTACTACTGCTCGAGTTATTGTCAGGGCACAAAGCGATACATAAGAACGAGAATGGGGTGCCTAGAAATGTAGTGGATCTTGTTGTTCCCTACATTGTTCAAGATGAAATACACAGGGTGTTGGACCCCAATGTGCCTCCCCCAACCCCATATGAGATAGAGGCAGTTACATACATAGGGTACATAGCAGCAGATTGTGTAACGCTAGAAGGTAGGGACCGGCCATCAATGACTGATATTGTACATAGCCTGGAAAGAGCCCTGGCTGCATGTTTCACACCACCATCTCCAATACCCTCGCCGCCAATTTCGCGGTCCACAACTGGGTCTTTGACGTAG 2067 48.38 MAKKQHFLKAFYYHFHCSTTRVSSMASPSKFLLLLTLSCLTCLPFISSLSSVSISETSNQTLICALLESSRLNCTSFPTGIQIPSVNRSFSGIVAGDGFQCVLSFPSATIMLCYRFSANGTNMHSKRLYYNDSALTEVAAGNTHVCGLVNGTNILHCWQWRGFNTSVQSDFSGIAVGEGFVCGLSSSGRITCIGTNSSSSSTIRDRVPSGSFQKVAAGFRHACAIYRNQSLVCWGETVGEEPQGEFVSLALGENRSCAMRGNGTVVCWGENGFSLPESLRETVFMTIEAKRSVFCGVDQYNFSLLCWGNEIFDSNSMVFPKVLPGSCTSSECPNGVVPGSGSMCGRGHICNAYQNRTLVEGPSQPPSPPPEVRNRSGWNDKMVAFLVVGCVGSASFLAVICFFLFRQRQTVQAQRAAPVLEKRLSQLVSLGNGGRLEEFSLQELRQATNDFSQEHRIGTGSFGCVYRATLEDGKEVAIKRAEVSTTSSNAVGTRRQEDKDTAFVSELDSLSRLNHRNLVRLLGYCEDYNEKIPAYERILDEDSHLSLHAAGTVGYMDPEYYRLQQLTPKSDVYSFGVLLLELLSGHKAIHKNENGVPRNVVDLVVPYIVQDEIHRVLDPNVPPPTPYEIEAVTYIGYIAADCVTLEGRDRPSMTDIVHSLERALAACFTPPSPIPSPPISRSTTGSLT* 689
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 25936490 25946775 - Vvi18g1597 Vvi18g1597 781300

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1597 688 Pfam Protein kinase domain 452 530 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi18g1597 688 Gene3D - 72 321 IPR009091 -
Vvi18g1597 688 PANTHER SERINE/THREONINE-PROTEIN KINASE-LIKE PROTEIN CCR4 26 548 IPR044815 GO:0004674
Vvi18g1597 688 PANTHER SERINE/THREONINE-PROTEIN KINASE-LIKE PROTEIN CCR4 543 684 IPR044815 GO:0004674
Vvi18g1597 688 ProSiteProfiles Protein kinase domain profile. 451 688 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi18g1597 688 Pfam Regulator of chromosome condensation (RCC1) repeat 247 273 - -
Vvi18g1597 688 Pfam Regulator of chromosome condensation (RCC1) repeat 214 235 - -
Vvi18g1597 688 Gene3D Transferase(Phosphotransferase) domain 1 532 669 - -
Vvi18g1597 688 SUPERFAMILY Protein kinase-like (PK-like) 437 681 IPR011009 -
Vvi18g1597 688 Pfam Protein tyrosine and serine/threonine kinase 548 660 IPR001245 GO:0004672|GO:0006468
Vvi18g1597 688 ProSitePatterns Protein kinases ATP-binding region signature. 457 479 IPR017441 GO:0005524
Vvi18g1597 688 SUPERFAMILY RCC1/BLIP-II 128 353 IPR009091 -
Vvi18g1597 688 PANTHER OJ000114_01.11 PROTEIN 543 684 - -
Vvi18g1597 688 PANTHER OJ000114_01.11 PROTEIN 26 548 - -
Vvi18g1597 688 Gene3D Phosphorylase Kinase; domain 1 425 531 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1597 - - - vvi:100246469 1004.59
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1597 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bma02g00315 . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012945 0 1 1 1 1 0 1 0 0 1 1 0 1 1 0 1 0 0 1 0 1 1 0 0 0 1 0 0 0 1 15
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76361 PF07714 PK_Tyr_Ser-Thr 1.70E-07 CL0016 Vvi PK