Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1598 ATGAAAAATTATATGAGCAAGGGGGGCATAAGCGGAAACACTTATTTTTCCAGAATAATACTGCAGCAGAAGCACTTCTTTGCCCAAAATACTCCCAAGTTTTGCTGTGAGACTTGGCTCCAATTACATCAACAACATCACCATCACTTGTCACTGTGTATAGTTATTATTATTGGTTATTCTCTTGTTCTGATTTCTCACAGCTGGAGCTATGATGTGTTCTTGAGCTTTAGAGGAGAAGACACCCGCAATAACTTCACTGCCCATCTCTATCAGGAGTTGCGCACTAAAGGAATCAACACTTTCATAGATGATGACAAGCTTGAGAGAGGCCGGGTCATATCTCCTGCCCTTGTTACAGCTATTGAGAACTCCATGTTTTCCATCATTGTTTTATCAGAAAATTATGCATCTTCTAAATGGTGTCTGGAGGAGCTTGCAAAGATACTAGAGTGCATGAAAACCAGGGGACAGAGGGTTCTCCCAATTTTCTATAATGTGGATCCCTCAGATGTGAGAAATCATAGGGGAAAATTTGGAGCAGCCTTAGCTGAACATGAGAAGAATTTGACGGAGAATATGGAGAGGGTGCAGATTTGGAAGGATGCTCTCACTCAAGTTGCAAATTTATCTGGTTGGGAATCAAGGAATAAGAATGAGCCTCTACTAATCAAGGAAATCGTTAAGCATGTTTTGAATAAATTGTTAAATATATGTAGTGGTGATACTGAGAAACTGGTTGGAATAGATGCTCGAATACAAGAAATAAAAATGCGATTACGTTTGGAATCGGATGATGTTGGTATGATAGGAATTTGGGGCATGGGCGGAATAGGGAAAACAACCCTTGCTAGAGCTCTTTACAATGAAATCTCAAGACAATTTGAAGCACACTCTTTTTTGGAAGATGTTGGAAAGGTTTTGGCTAATGAGGGATTAATCAAATTACAACAAATATTTCTTTCTAGCCTATTGGAGGAAAAAGATCTAAATATGAAAGGACTCACATCTATAAAGGCTAGACTCCATTCAAAAAAGGTCCTTGTTGTTCTCGACAATGTGAATGACCCAACAATATTTGAATGCTTAATTGGAAATCAGGATTGGTTTGGTCGAGGAAGTAGAATTATTATAACGGCTAGAGATAAATGTTTAATTTCACATGGTGTTGATTATTATGAGGTCCCAAAATTTAATTCGGATGAAGCTTATGAGTTCATTAAATGTCATTCGTTAAAACATGAACTTCTTCGAGGTGATTTCATGGAGCTTTCAACATCAATGATAGGTTATGCTCAAGGCCTTCCATTGGCTTTGAAAGTTTTACGTCCTATTTTATTTAGCATGAGCAAAGAAGAATCAAGAAATCAATTAGACAAACTGAAAAGTACTCTTAATAAGAAAATTGAGGAAGTACTTAGAATCAGTTACGATGGGTTAGATGATAAAGAGAAGAATATATTTTTGGATATTGCATGTTTCTTTAAAGGAGAAGATAAAGATTATGTAATTGAAATATTGGACGGTTGTGGCTTTTTCCCATTATGTGGAATAAGGTCTCTCATTGATAAATCTTTGATAAGTATTTATGGAAATAAGTTTCAGATGCATGACTTAATACAAGAAATGGGTTTGGAAATTGTTCGCCAACAATCTCTTCAAGAGCTCGGCAAACGTAGCAGATTGTTATTCCATGAAGATATCTATGATGTATTGAAAAAAAATACGGGAAGTGAAAAAATTGAAGGCATATTCCTCAACTTGTTTCATTTACAAGAGACAATAGACTTTACCACACAAGCCTTTGCAGGGATGAGTAAACTTAGATTGCTCAAAGTCTATCAATCTGACAAAATTTCAAGAAACTCTGAAGATACCTTTATGAAGGAGAATTTTAAAGTTCGTTTCTCTTCGAATTTTAAATTTTGTTACGATGAATTGAGGTACTTAGATTTGTATGGATACTCCTTGAAATCATTGCCTAATGATTTCAATGCAAAGAATCTTGTTCACCTCAGCATGCCTTGTAGCCGCATTGAACAACTTTGGAAAGGAATCAAGGTTCTTGAAAAGTTGAAACGCATGGATCTTAGTCACTCTAAGTACTTAATAGAAACCCCAAATCTCTCAAGAGTCACCAACTTGGAACGGTTAGTTTTAGAAGATTGTGTGTCTCTATGTAAGGTTCACCCATCACTTAGAGATTTGAAGAATCTCAAATTTTTGAGTTTGAAAAACTGCAAAATGCTCAAGAGTCTTCCAAGCGGCCCTTATGACTTGAAATCCCTTGAAATATTGATTCTTTCGGGCTGCTCAAAATTTGAACAATTTCTGGAGAACTTTGGGAACTTAGAAATGTTAAAGGAACTTTATGCAGATGGAACTGCACTAAGAGAACTACCCTCCTCTTTGTCTTTGTCGAGAAACCTTGTGATATTATCTTTGGAGGGATGTAAGGGACCACCATCTGCCTCGTGGTGGTTTCCTAGAAGAAGTTCCAATTCCACTGGTTTCAGATTGCATAATTTGTCAGGCTTATGCTCTTTAAGTACGCTAAACCTAAGTTACTGCAATTTGTCAGATGAAACAAACCTTAGTAGTCTTGTTTTGTTATCTTCATTGGAATATTTACATTTATGTGGGAACAACTTTGTTACGTTGCCAAACCTCAGTCGACTTTCACGCTTGGAAGATGTTCAGTTGGAAAATTGCACAAGACTTCAAGAACTGCCAGATCTCCCATCAAGCATTGGTCTGTTGGATGCAAGAAATTGCACATCATTGAAAAATGTCCAGTCACACCTAAAGAATCGCGTAATCAGGGTTCTAAACTTGGTTTTGGGATTATACACGTTGACTCCTGGGAGTAGACTACCAGATTGGATAAGGTATAAGAGCTCAGGGATGGAAGTAATAGCAGAGCTACCTCCAAATTGGTTTAATTCCAACTTCCTGGGTTTTTGGTTTGCAATTGTCGTTCCCAAGTTTAGTGGTCTAGATCGTTTTCACGCTGTATCCTGTTCCTTGTCCCTTTCAAGATCCAGTGGCTTTACTCACTACTTCACATTCTGTCCTCATTCGTCTTGTCAGATGCTAATGTTGGATCACGTAGCACTGTTTTATTTTTCACTTTCTTTCCTCAGCGATTGGTGTGGACACATCAATTGGCATCAAGTGACTCACATCAAGGCATTGTTCTACCCACATTCTGTCCAATTTAGTGAACCTAAGTGGAATGGAATTGGTCTGGCGTACAGTAATGAAGATGTGAATCACAACAACCCCCCAATGATCCAATTCGGCTCTATTTCCTCTGCTTCCTCTGCTCCTAATAAGTCAACAGTTGTCCTTACAGAAATCCATGATGAGGAACCCAGTGGAAGTGTTGATGGCTCGGAATTGGATAATTCTGGGTACTGTACTGCTGACGAGGGGGAACCAGCTGATACTCTTGCTCTAAGGATCCGTCTGAATCAGAGATGCAGCCACAGAAACGCTTGA 3501 38.16 MKNYMSKGGISGNTYFSRIILQQKHFFAQNTPKFCCETWLQLHQQHHHHLSLCIVIIIGYSLVLISHSWSYDVFLSFRGEDTRNNFTAHLYQELRTKGINTFIDDDKLERGRVISPALVTAIENSMFSIIVLSENYASSKWCLEELAKILECMKTRGQRVLPIFYNVDPSDVRNHRGKFGAALAEHEKNLTENMERVQIWKDALTQVANLSGWESRNKNEPLLIKEIVKHVLNKLLNICSGDTEKLVGIDARIQEIKMRLRLESDDVGMIGIWGMGGIGKTTLARALYNEISRQFEAHSFLEDVGKVLANEGLIKLQQIFLSSLLEEKDLNMKGLTSIKARLHSKKVLVVLDNVNDPTIFECLIGNQDWFGRGSRIIITARDKCLISHGVDYYEVPKFNSDEAYEFIKCHSLKHELLRGDFMELSTSMIGYAQGLPLALKVLRPILFSMSKEESRNQLDKLKSTLNKKIEEVLRISYDGLDDKEKNIFLDIACFFKGEDKDYVIEILDGCGFFPLCGIRSLIDKSLISIYGNKFQMHDLIQEMGLEIVRQQSLQELGKRSRLLFHEDIYDVLKKNTGSEKIEGIFLNLFHLQETIDFTTQAFAGMSKLRLLKVYQSDKISRNSEDTFMKENFKVRFSSNFKFCYDELRYLDLYGYSLKSLPNDFNAKNLVHLSMPCSRIEQLWKGIKVLEKLKRMDLSHSKYLIETPNLSRVTNLERLVLEDCVSLCKVHPSLRDLKNLKFLSLKNCKMLKSLPSGPYDLKSLEILILSGCSKFEQFLENFGNLEMLKELYADGTALRELPSSLSLSRNLVILSLEGCKGPPSASWWFPRRSSNSTGFRLHNLSGLCSLSTLNLSYCNLSDETNLSSLVLLSSLEYLHLCGNNFVTLPNLSRLSRLEDVQLENCTRLQELPDLPSSIGLLDARNCTSLKNVQSHLKNRVIRVLNLVLGLYTLTPGSRLPDWIRYKSSGMEVIAELPPNWFNSNFLGFWFAIVVPKFSGLDRFHAVSCSLSLSRSSGFTHYFTFCPHSSCQMLMLDHVALFYFSLSFLSDWCGHINWHQVTHIKALFYPHSVQFSEPKWNGIGLAYSNEDVNHNNPPMIQFGSISSASSAPNKSTVVLTEIHDEEPSGSVDGSELDNSGYCTADEGEPADTLALRIRLNQRCSHRNA* 1167
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 25979170 26009592 - Vvi18g1598 Vvi18g1598 781301

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1598 1166 Coils Coil 451 471 - -
Vvi18g1598 1166 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 65 1027 IPR044974 GO:0006952
Vvi18g1598 1166 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 238 491 IPR027417 -
Vvi18g1598 1166 Pfam C-JID domain 954 1087 IPR045344 -
Vvi18g1598 1166 Pfam Leucine Rich Repeat 668 687 IPR011713 -
Vvi18g1598 1166 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 65 1027 - -
Vvi18g1598 1166 Gene3D Ribonuclease Inhibitor 780 945 IPR032675 -
Vvi18g1598 1166 SUPERFAMILY L domain-like 535 944 - -
Vvi18g1598 1166 Gene3D Ribonuclease Inhibitor 579 779 IPR032675 -
Vvi18g1598 1166 MobiDBLite consensus disorder prediction 1122 1141 - -
Vvi18g1598 1166 SUPERFAMILY Toll/Interleukin receptor TIR domain 66 213 IPR035897 -
Vvi18g1598 1166 ProSiteProfiles Leucine-rich repeat profile. 848 869 IPR001611 GO:0005515
Vvi18g1598 1166 Gene3D - 398 481 IPR042197 -
Vvi18g1598 1166 PRINTS Disease resistance protein signature 269 284 - -
Vvi18g1598 1166 PRINTS Disease resistance protein signature 341 355 - -
Vvi18g1598 1166 PRINTS Disease resistance protein signature 432 446 - -
Vvi18g1598 1166 PRINTS Disease resistance protein signature 734 750 - -
Vvi18g1598 1166 Gene3D - 240 391 IPR027417 -
Vvi18g1598 1166 Pfam NB-ARC domain 252 471 IPR002182 GO:0043531
Vvi18g1598 1166 SMART till_3 70 210 IPR000157 GO:0007165
Vvi18g1598 1166 ProSiteProfiles TIR domain profile. 69 235 IPR000157 GO:0007165
Vvi18g1598 1166 Gene3D - 67 239 IPR035897 -
Vvi18g1598 1166 Pfam TIR domain 71 242 IPR000157 GO:0007165
Vvi18g1598 1166 ProSiteProfiles Leucine-rich repeat profile. 873 894 IPR001611 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1598 - - - vvi:100265505 1333.16
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1598 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013419 0 0 0 0 0 1 0 1 2 0 1 1 0 0 1 0 1 0 0 1 0 1 0 4 2 1 1 0 1 5 24