Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1599 ATGGAGAGGGTGCAGATTTGGAAGGATGCTCTCACTCAAGTTGCAAATTTATCTGGTTGGGAATCAAGGAATAAGAATGAGCTTCTACTAATCAAGGAAATCGTTAAGCATGTTTTCAATAAATTGATAAATATATGTAGTGGTGATACTGAGAAACTGGTTGGAATAGATGCTCGCATACAAGAAATAAAAATGCGATTACGTTTGGAATCGGATGATGTTGGTATGATAGGAATTTGGGGCATGGGCGGAATAGGGAAAACAACCCTTGCTAGAGCTCTTTACAACGAAATCTCAAGACAATTTGAAGCACACTCTTTTTTGGAAGATGTTGGAAAGGTTTTGGTTAATAAGGGTTTAATCAAATTACAACAAATATTTCTTTATGATCTATTGGAGGAAAAAGATCTAAATACAAAGGGATTCACATTTATAAAGGCTAGACTCCATTCAAAAAAGGCCCTTGTTGTTCTCGACAATGTGAATGATCCAAAAATATTGGAATGCTTAGTTGGAAATTGGGATTGGTTTGGTCGAGGAAGTAGAATTATTATAACGGCTAGAGATAAACATTTGTTAATTGCACATGGTGTCCTTTGTTATCAGGTTCCAACATTTAATTATGATGAAGCTTATGGGTTCATTAAACGTCATTCGTTAAAACATGAGCTTCTTATTGGTGATTTCTTGGAGCTTTCTAAAGAAATGATAGATTATGCTAAAGGCCTTCCGCTGGCTCTTAAAGTTTTATGTTCTTCTTTATTTGGCATGAGCAAAAAAGAACGGAGAAATCAGTTGGACAAATTGAAAAGTACTCTTCATAAGAAAATTGAGGAAGTACTTAGAATCAGTTATGATGGGTTAGATGATAAAGAGAAGAATATATTTTTGGATATTGCATGTTTCTTTAAAGGAGAAGACAAAGATTATGTAATTGAAATATTGGATGGTTGCGGCTTTTTCTCATCATGTGGAATAAGAACTCTCGTTAATAAATCTTTGATAAGTATTTATGGGAATAAGCTTGAGATGCATGACTTAATACAAGAAATGGGTATAGAAATTGTTCGCCAACAATTTGTTCAAGAGCTCGGCAAACAACAACTTTGTTACGTTGCCAAACCTCAGTCGACTTTCACGCTTGGAACGTTTTCGGTTGGCAAATTGCACAAGACTTCAAGAACTGCCAGATCTCCCATCAAGCATTGTTCAAGTGGATGCAAGAAATTGCACGTCATTGAAAAATGTCTCGCTTCGAAATGTCCAGTCATTCCTTCTAAAGAATCGCGTAATCTGGGATCTAAACTTCGTTTTGGCATTAGAAATATTGACTCCTGGGAGTAG 1344 35.71 MERVQIWKDALTQVANLSGWESRNKNELLLIKEIVKHVFNKLINICSGDTEKLVGIDARIQEIKMRLRLESDDVGMIGIWGMGGIGKTTLARALYNEISRQFEAHSFLEDVGKVLVNKGLIKLQQIFLYDLLEEKDLNTKGFTFIKARLHSKKALVVLDNVNDPKILECLVGNWDWFGRGSRIIITARDKHLLIAHGVLCYQVPTFNYDEAYGFIKRHSLKHELLIGDFLELSKEMIDYAKGLPLALKVLCSSLFGMSKKERRNQLDKLKSTLHKKIEEVLRISYDGLDDKEKNIFLDIACFFKGEDKDYVIEILDGCGFFSSCGIRTLVNKSLISIYGNKLEMHDLIQEMGIEIVRQQFVQELGKQQLCYVAKPQSTFTLGTFSVGKLHKTSRTARSPIKHCSSGCKKLHVIEKCLASKCPVIPSKESRNLGSKLRFGIRNIDSWE* 448
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 26017660 26020840 - Vvi18g1599 Vvi18g1599 781302

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1599 447 Gene3D - 47 198 IPR027417 -
Vvi18g1599 447 PRINTS Disease resistance protein signature 76 91 - -
Vvi18g1599 447 PRINTS Disease resistance protein signature 148 162 - -
Vvi18g1599 447 PRINTS Disease resistance protein signature 240 254 - -
Vvi18g1599 447 PANTHER DISEASE RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 7 366 - -
Vvi18g1599 447 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 42 299 IPR027417 -
Vvi18g1599 447 Pfam NB-ARC domain 59 279 IPR002182 GO:0043531
Vvi18g1599 447 Gene3D - 1 46 IPR035897 -
Vvi18g1599 447 SUPERFAMILY Winged helix DNA-binding domain 275 359 IPR036390 -
Vvi18g1599 447 Gene3D - 207 289 IPR042197 -
Vvi18g1599 447 Coils Coil 259 279 - -
Vvi18g1599 447 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 7 366 IPR044974 GO:0006952
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1599 - - - vri:117929824 589.341
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1599 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013419 0 0 0 0 0 1 0 1 2 0 1 1 0 0 1 0 1 0 0 1 0 1 0 4 2 1 1 0 1 5 24