Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g16 ATGGCTGGGGGGCTGCAACTGACGAGACATGTGGTGGGGACTCAGGGTTACATGGCTCCCGAGTACGTAGAGAATGGTGTGGTTACCCCAAAACTAGATATTTTTGCTTTCGGTGTTGTGATATTAGAGCTGTTAACTGGCAAGGAAGCTGCGCCTTCTCAAAAGAAAGAAGGAGGGGAGTTGTTATCTGTGTCAATAAATGAGGTGCTTCAAGGGGATAATGTGAGAGACAAACTGAGAGGCTTCATTGATCCTTGCCTTGCCCATGAGTACCCCTTTGATTTGGCTTTCTCCATGGCCCAGCTCGCCAAGTCATGTGTTGCCCATGACCTTAATGCTCGCCCAACCATGTCTGACATTTTCGTTATCCTCTCCAAGATTCTCTCCTCCTCTTTGGACTGGGATCCATCTGATGATTTTCAAGCCTCTGGCTCTCTAAGCCATGCCTATCTCCTCAACTCCAACCCCTCTGATATCGCCACCATTAACCAAATCTCGGATGTTAACAAGATCCCCAAGGACACTGTCCTCATTGTCCCGGTCAATTGTTCTTGTTCAGGCCATTTCTACCAGTACAACGCCTCCTACACCTTGAAGTATGATTTCGAGAATTACTTCACCCTCGCCAACAACACCTACCAAGGCCTCACCACTTGCCAGGCACTCAAGGCTCACAACCCATATTACTATCGAAACCTTTCCGTGGGTATGGACCTGCTGGTTCCTCTCATGTGCGCCTGCCCCACCGCCAACCAGACCGCCGCCGGCTTCAACTACTTGCTCACTTATCTCGTTACTTGGGGCGATTACATCTCTTCAATTGCAGATACCTTCGGTGTCGATGACATACAGTCCATATTTGATGCCAATAGCCTCTCTTCCGACCTTATTTTCCCCTTCACCCCAATTCTTGTCCCGCTAAAGAATCCTCCCACCAGGATCCAAACTACCCTCTCTCCACCGCCTCCAAAATCGCCCGTAGTCCCCAACGGTGGAGGGGCTGATTCTTCCAAGAAATGGGTTTACGTTGGGGTTGGGATTGGAGCCACTTTACTCGTTCTTTTAATGCCCTCCGGAATTATATTATGCACGAAGAAGCCTTCGTACTCCATGGAAAACAACATATCATTATCTGTTTCTTCAGGAGGCATTCATCACGCAGTAGAGTCCTTGACGGTGTACAAGTATGAGGAGTTGCAAAAGGCAGCTGGATTTTTCGGAGAAGCTAACAGAATTAAGGGTTGTGTATACAGGGGTTTGATTAAGGGTGATGATGCGGCCATAAAGATGATGAAAGGAGACGTGTCTGAGGAGATCAATATACTGAAACTGATCAATCATAGCAACGTGATCAGGCTTTCAGGTTTCTGCGTACACAAGGGGAACACCTACCTAGTTTATGAGTATGCGGAGAATGGGTCTCTCAGCGACTGGCTTCATGGTGATGGTCGAATTGGTTCTACTCTGGGATGGAAGCAGAGGGTTCAAATAGCCTGTGATGTGGCGAATGCCCTGAATTACCTCCACAACTTCACCAATCCCCCATGTATACACAAGAACTTGAAGAGCAGCAACATCCTCTTGGATGGTAATATGAGAGGCAAGGTCGCCAATTTTGGGCTGGCAAGAAGACTGGAGAATGAAGAGGGGGGAGAACTGGATGCTTTTGCTTTTGGTGTGGTGATATTGGAGCTGTTAACAGGCAAGGAAGCCGCACCTTCTCAAAACAAGGAGGGGAGGGGGTTGTGTGTGTCAGTAAACGAGGTGCTTGAGGGGGATGATGTGAGACACAAACTGAGAGGCTTCATTGATCCTTGCCTCACCCATGACTACCCCTTTGATTTGGCTTTCACAATGGCCCAGCTGGCTAAATCTTGCATTGCCCATGATCTTAATGCTCGCCCAACCATGTTTGACATTTTGATTATCCTCTCCAAGATTCTCTCCTCCTCCTTGGACTGGGATTCATTTGATGATTTTCAATCCACTGGCTTTCTAAGCCATGGGAGAATTTTACATGCAATTCAACTTTTCTGCTACTAA 2043 47.67 MAGGLQLTRHVVGTQGYMAPEYVENGVVTPKLDIFAFGVVILELLTGKEAAPSQKKEGGELLSVSINEVLQGDNVRDKLRGFIDPCLAHEYPFDLAFSMAQLAKSCVAHDLNARPTMSDIFVILSKILSSSLDWDPSDDFQASGSLSHAYLLNSNPSDIATINQISDVNKIPKDTVLIVPVNCSCSGHFYQYNASYTLKYDFENYFTLANNTYQGLTTCQALKAHNPYYYRNLSVGMDLLVPLMCACPTANQTAAGFNYLLTYLVTWGDYISSIADTFGVDDIQSIFDANSLSSDLIFPFTPILVPLKNPPTRIQTTLSPPPPKSPVVPNGGGADSSKKWVYVGVGIGATLLVLLMPSGIILCTKKPSYSMENNISLSVSSGGIHHAVESLTVYKYEELQKAAGFFGEANRIKGCVYRGLIKGDDAAIKMMKGDVSEEINILKLINHSNVIRLSGFCVHKGNTYLVYEYAENGSLSDWLHGDGRIGSTLGWKQRVQIACDVANALNYLHNFTNPPCIHKNLKSSNILLDGNMRGKVANFGLARRLENEEGGELDAFAFGVVILELLTGKEAAPSQNKEGRGLCVSVNEVLEGDDVRHKLRGFIDPCLTHDYPFDLAFTMAQLAKSCIAHDLNARPTMFDILIILSKILSSSLDWDSFDDFQSTGFLSHGRILHAIQLFCY* 681
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 257297 263356 + Vvi18g16 Vvi18g16 779719

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g16 680 Pfam Protein kinase domain 8 120 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi18g16 680 ProSiteProfiles Protein kinase domain profile. 395 648 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi18g16 680 Pfam Protein tyrosine and serine/threonine kinase 427 548 IPR001245 GO:0004672|GO:0006468
Vvi18g16 680 Pfam LysM domain 263 306 IPR018392 -
Vvi18g16 680 Gene3D Transferase(Phosphotransferase) domain 1 470 551 - -
Vvi18g16 680 PANTHER LYSM-DOMAIN RECEPTOR-LIKE KINASE-RELATED 147 664 - -
Vvi18g16 680 PANTHER LYSM-DOMAIN RECEPTOR-LIKE KINASE-RELATED 5 144 - -
Vvi18g16 680 SUPERFAMILY Protein kinase-like (PK-like) 6 132 IPR011009 -
Vvi18g16 680 Gene3D LysM domain 261 316 IPR036779 -
Vvi18g16 680 ProSiteProfiles LysM domain profile. 261 305 IPR018392 -
Vvi18g16 680 Gene3D Transferase(Phosphotransferase) domain 1 552 660 - -
Vvi18g16 680 Gene3D Transferase(Phosphotransferase) domain 1 3 139 - -
Vvi18g16 680 PANTHER PROTEIN LYK5 147 664 - -
Vvi18g16 680 PANTHER PROTEIN LYK5 5 144 - -
Vvi18g16 680 SUPERFAMILY Protein kinase-like (PK-like) 414 641 IPR011009 -
Vvi18g16 680 ProSiteProfiles Protein kinase domain profile. 1 128 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi18g16 680 Gene3D Phosphorylase Kinase; domain 1 380 469 - -
Vvi18g16 680 CDD LysM 262 299 IPR018392 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g16 - - - vvi:100258108 780.015
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g16 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0023694 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 1 3
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76362 PF07714 PK_Tyr_Ser-Thr 3.50E-24 CL0016 Vvi PK