Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g160 ATGCGGTGTAGTGTAGGTAATGAGGCAAGCGGTCTTCGCAGCTTCCCAATTGAGATAAAGAGGAGAGCATTGCAGATTCAAGAGTTTCATCTCCTCTTGTTCTCTTTCTTTTTCTCATTCTCTCTATGGATTCACTCACTCTTTTCTGTACGGCGGCTCTTTTGGCCGGCGGCCTCTACTGGTTCGTCTGCATTCTTGGAAATCGAAACCGCCGAGAAAGTGCCTGACTTTGTAGATACATTCTACAATCTCGTCACAGACATCTACGAATGGGGATGGGGCCAGTCCTTCCACTTCTCTCCCGCCGTCCCGGGGAAGTCCCACCGTGACGCCACGCGCCTCCATGAGGAGATGGCGGTGGATCTCATCGACGTAAAGCCCGGAGATCGAATCCTGGACGTTGGATGCGGAGTGGGAGGTCCTATGCGCGCAATCGCGGCTCACTCGCGGGCCAATGTTGTGGGGATCACCATCAATGAGTACCAAGTGAATCGCGCCCGCTTGCACAACAGAAAGGCCGGGTTGGACTCGCTCTGCGAAGTCGTGTGTGGCAATTTCCTCCAGATGCCGTTCGCTGACAACAGCTTCGACGGCGCGTACTCCATCGAAGCTACATCCAGAACACGTGGATGTCATTCAAGGCATCGAGAGAGGATTGCCTACTGGAGGAACCACATTCTGATTATGATATTCGCCGCCTTGGGAATCGCACCAAAGGGAACTGTGGATGTTCATGAGATGCTGTTCAAGACAGCTGATTATCTCACAAGAGGCGGCGAGTCCGGAATTTTCACTCCAATGCACATGATCCTCTGCAGAAAACCTGAATCCTCAGAACACGATTGA 846 52.36 MRCSVGNEASGLRSFPIEIKRRALQIQEFHLLLFSFFFSFSLWIHSLFSVRRLFWPAASTGSSAFLEIETAEKVPDFVDTFYNLVTDIYEWGWGQSFHFSPAVPGKSHRDATRLHEEMAVDLIDVKPGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNRKAGLDSLCEVVCGNFLQMPFADNSFDGAYSIEATSRTRGCHSRHRERIAYWRNHILIMIFAALGIAPKGTVDVHEMLFKTADYLTRGGESGIFTPMHMILCRKPESSEHD* 282
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 1565404 1566718 + Vvi18g160 Vvi18g160 779863

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g160 281 ProSiteProfiles SAM-dependent methyltransferase Erg6/SMT-type domain profile. 81 205 IPR030384 GO:0008168
Vvi18g160 281 CDD AdoMet_MTases 130 202 - -
Vvi18g160 281 PANTHER 24-METHYLENESTEROL C-METHYLTRANSFERASE 3 217 278 - -
Vvi18g160 281 PANTHER 24-METHYLENESTEROL C-METHYLTRANSFERASE 3 67 207 - -
Vvi18g160 281 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 81 275 IPR029063 -
Vvi18g160 281 Pfam Sterol methyltransferase C-terminal 218 276 IPR013705 GO:0006694|GO:0008168
Vvi18g160 281 Pfam Mycolic acid cyclopropane synthetase 78 206 - -
Vvi18g160 281 Gene3D Vaccinia Virus protein VP39 64 221 IPR029063 -
Vvi18g160 281 PANTHER - 67 207 IPR044625 GO:0008168|GO:0032259
Vvi18g160 281 PANTHER - 217 278 IPR044625 GO:0008168|GO:0032259
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g160 K08242 E2.1.1.143; 24-methylenesterol C-methyltransferase [EC:2.1.1.143] - vvi:100254003 292.737
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi3g210 Vvi18g160 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g160 . . . . . . . . . . . Cma09g00083 . . . Cpe06g00047 . . . . . . . . . . . . . . . . . . . Lsi04g01780 . Chy04g00390 . . Blo18g00762 . Bda01g01547 Bpe02g01743 . Bma01g00715 . Sed12g1477 . Cmo09g00082 . . . Car09g00072 . Cpe02g00582 Bhi09g02717 Tan01g4064 Cmetu07g2081 . . Mch11g0857 . Cla05g01596 Cam05g1707 Cec05g1707 Cco05g1763 Clacu05g1694 Cmu05g1583 Cre05g1701 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007184 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 4 1 1 1 1 1 2 1 1 1 1 1 1 34