Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1611 ATGGGTTGGGCAATTATTCGTGAAGAATGTCTTGGAGACCCCTGCAAATGGAGTAGATTGTGGGATGTAGATGATATTTATGATGCATTTTCTAAACAAGAGGAGATGCAAAATATTCAAACCATATCTTTGGACTTGTCTAGATCAAGAGAAATACAATTCAATACAAAAGTGTTTTCCAAGATGAAGAAACTTAGGTTGCTTAAAATCTATTGCAATGATCATGATGGTTTGACGAGAGAGGAGTATAAAGTGCTTCTTCCTAAAGACTTTCAATTTCCTCATGATTTGAGATATCTTCATTGGCAAAGATGCACTTTGACGTCTTTACCTTGGAACTTTAATGGAAAGCACCTGATTGAAATCAACTTGAAGTCTAGCAACGTAAAACAACTTTGGAAAGGGAATAGGCTTTATTTAGAAAGATGTTCAAAGTTTGAGAAATTTCCGGATACATTTACCTATATGGGACATTTAAGGGGGCTTCATTTACGTGAGAGTGGTATTAAAGAACTCCCAAGCAGCATTGGGTATTTGGAATCTCTTGAAATTCTTGACCTCTCATGTTGCTCCAAATTTGAGAAATTCCCAGAGATCCAAGGGAATATGAAATGTTTGTTGAATCTTTTTTTAGATGAGACTGCTATTAAGGAACTCCCAAATAGCATTGGGTCCTTAACCTCTCTTGAAATGCTTTCTCTTAGAGAATGTTCAAAGTTTGAGAAATTTTCAGATGTATTTACCAATATGGGGCGTTTAAGGGAGCTATGTCTATATGGGAGTGGTATTAAGGAACTCCCAGGCAGCATTGGGTATTTGGAATCTCTTGAAGAACTTAACCTCAGATATTGCTCAAACTTTGAGAAATTTCCAGAGATCCAAGGGAATATGAAATGCTTGAAGATGCTTTGTTTAGAGGATACTGCTATTAAGGAACTCCCAAATGGCATTGGGCGCTTGCAGGCCCTTGAAATTCTTGATCTCAGTGGTTGCTCAAATCTTGAGAGGTTTCCTGAGATTCAAAAAAATATGGGGAATCTATGGGGTCTTTTTCTAGATGAGACTGCTATTAGAGGATTACCCTACTCAGTAGGTCATCTCACCAGACTTGAACGCTTAGATTTGGAAAATTGTAGAAACTTGAAAAGTCTTCCAAACAGTATATGTGGGTTGAAATCCCTCAAAGGCCTCTCTCTCAATGGTTGTTCAAATCTAGAGGCTTTTTTAGAGATCACGGAGGATATGGAACAATTAGAAGGCCTTTTTTTATGTGAGACGGGTATCTCAGAGCTGCCATCATCAATTGAACATCTGAGAGGTCTTAAATCCTTGGAATTGATCAATTGTGAGAACCTTGTGGCTCTTCCCAATAGCATCGGTAATTTGACATGTCTTACTAGTCTTCATGTTCGTAACTGTCCAAAGCTCCACAACTTGCCTGACAATTTGAGAAGCCAGCAATGTATCTTAACGTCGCTAGATCTAGGTGGTTGCAATCTGATGGAAGAAGAAATCCCCAGTGATTTATGGTGCCTATCCTCACTGGAATTTTTAAACATAAGTGAAAACCATATGCGTTGCATACCTACTGGCATCACTCATCTTTGTAAGCTTCGTACCCTTCTCATGAATCATTGTCCGATGCTTGAAGTAATTGGAGAGCTTCCATCAAGTCTAGGATGGATAGAGGCACATGGTTGTCCATGCCTGGAAACTGAAACTTCTTCAAGTCTACTCTGGTCTTCTTTGCTCAAACACTTGAAATCACCAATTCAGCGGAGATTTAATATTATCATTCCAGGAAGTAGTGGAATACCAGAGTGGGTAAGTCATCAAAGAATGGGATGTGAAGTAAGTGTGGAGCTTCCAATGAATTGGTATGAAGATAATAACTTGTTAGGATTTGTTTTATTCTTCCATCATGTTCCCCTTGATGATGATGAATGCGTGAGAACATCTTATTTTCCTCAATGTGAATTGGCGATATCCCATGGTGATCAATCTAAACGACTGGATAATATTCATTTTCATCCTCATTGTAAAAGATACTGCATTGAAGGTATATCATGTAGCAGCGAACGCTACGACAGTGGTAGCACATCAGATCCAGCACTGTGGGTGACGTATTTCCCGCAGATTGGCATTCCAAGCAAGTATCGATCCAGAAAGTGGAACAACTTCAAGGCTCACTTTTACAATCGTGTCTATAATGCCTCTTTTACATGTGGCGAAAACGCATCCTTTAAAATGAAAAGTTTTTCCAAAGGATCAAGGGTTTCTTTAACCTCTAGCAAGGTTGCGCATGGAAACTAG 2313 38.91 MGWAIIREECLGDPCKWSRLWDVDDIYDAFSKQEEMQNIQTISLDLSRSREIQFNTKVFSKMKKLRLLKIYCNDHDGLTREEYKVLLPKDFQFPHDLRYLHWQRCTLTSLPWNFNGKHLIEINLKSSNVKQLWKGNRLYLERCSKFEKFPDTFTYMGHLRGLHLRESGIKELPSSIGYLESLEILDLSCCSKFEKFPEIQGNMKCLLNLFLDETAIKELPNSIGSLTSLEMLSLRECSKFEKFSDVFTNMGRLRELCLYGSGIKELPGSIGYLESLEELNLRYCSNFEKFPEIQGNMKCLKMLCLEDTAIKELPNGIGRLQALEILDLSGCSNLERFPEIQKNMGNLWGLFLDETAIRGLPYSVGHLTRLERLDLENCRNLKSLPNSICGLKSLKGLSLNGCSNLEAFLEITEDMEQLEGLFLCETGISELPSSIEHLRGLKSLELINCENLVALPNSIGNLTCLTSLHVRNCPKLHNLPDNLRSQQCILTSLDLGGCNLMEEEIPSDLWCLSSLEFLNISENHMRCIPTGITHLCKLRTLLMNHCPMLEVIGELPSSLGWIEAHGCPCLETETSSSLLWSSLLKHLKSPIQRRFNIIIPGSSGIPEWVSHQRMGCEVSVELPMNWYEDNNLLGFVLFFHHVPLDDDECVRTSYFPQCELAISHGDQSKRLDNIHFHPHCKRYCIEGISCSSERYDSGSTSDPALWVTYFPQIGIPSKYRSRKWNNFKAHFYNRVYNASFTCGENASFKMKSFSKGSRVSLTSSKVAHGN* 771
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 26257298 26262353 - Vvi18g1611 Vvi18g1611 781314

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1611 770 Pfam C-JID domain 603 672 IPR045344 -
Vvi18g1611 770 Gene3D Ribonuclease Inhibitor 408 592 IPR032675 -
Vvi18g1611 770 Gene3D Ribonuclease Inhibitor 243 407 IPR032675 -
Vvi18g1611 770 SMART LRR_typ_2 297 320 IPR003591 -
Vvi18g1611 770 SMART LRR_typ_2 415 438 IPR003591 -
Vvi18g1611 770 SMART LRR_typ_2 512 535 IPR003591 -
Vvi18g1611 770 SMART LRR_typ_2 367 391 IPR003591 -
Vvi18g1611 770 SMART LRR_typ_2 203 226 IPR003591 -
Vvi18g1611 770 SMART LRR_typ_2 250 273 IPR003591 -
Vvi18g1611 770 SMART LRR_typ_2 156 179 IPR003591 -
Vvi18g1611 770 Gene3D Ribonuclease Inhibitor 28 242 IPR032675 -
Vvi18g1611 770 PANTHER LEUCINE-RICH REPEAT-CONTAINING 384 486 - -
Vvi18g1611 770 PANTHER LEUCINE-RICH REPEAT-CONTAINING 223 402 - -
Vvi18g1611 770 PANTHER LEUCINE-RICH REPEAT-CONTAINING 455 729 - -
Vvi18g1611 770 PANTHER LEUCINE-RICH REPEAT-CONTAINING 87 244 - -
Vvi18g1611 770 PANTHER DISEASE RESISTANCE PROTEIN (NBS-LRR CLASS) FAMILY PROTEIN 455 729 - -
Vvi18g1611 770 PANTHER DISEASE RESISTANCE PROTEIN (NBS-LRR CLASS) FAMILY PROTEIN 384 486 - -
Vvi18g1611 770 PANTHER DISEASE RESISTANCE PROTEIN (NBS-LRR CLASS) FAMILY PROTEIN 223 402 - -
Vvi18g1611 770 PANTHER DISEASE RESISTANCE PROTEIN (NBS-LRR CLASS) FAMILY PROTEIN 87 244 - -
Vvi18g1611 770 Pfam Leucine Rich Repeat 369 391 IPR001611 GO:0005515
Vvi18g1611 770 SUPERFAMILY L domain-like 250 596 - -
Vvi18g1611 770 SUPERFAMILY L domain-like 88 342 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1611 - - - vvi:100248194 1137.09
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1611 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cla11g00847 Cam11g0877 Cec11g0878 Cco11g0873 Clacu11g0985 Cmu11g0836 Cre11g1321 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004792 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 24 24