Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1612 ATGGATCTTTTCTCATTTCTTCTTCACCCTATACTCCTTTCTGTGTCTCTATGCGTAGTCTTCCTTGTCCGCAGATACAAATCTGCCACCGCAAAGCTTCCGCCGGGTAATCAAGGATGGCCCATCATAGGAGAAACTTTGGCATTCGCTTTGGGAAGCAAGAGTGGGAACCCCACAAGGTTCATAAAGGAAAGAATGATGAAATACTCCCCCGATGTGTTCCGGACCTCCTTGGTGGGCGAGAAGGTCGCTGTCTTCTGTGGCCCCGCAGGGAACAAGTTTCTATTCTCAAACCACAACAAGCTCGTTGCCACTTGGAAGCCGCGGTCCATGGAGAAGATACTGCTCTTCGAGTCTCCCCCAAAGGTAGAACCAAGAGGATTGCGCAGCTATGTCCTGGAATTTCTAAGGCCAGATGTGCTACAGCGCTATATACAAATCATGGATTCCATGGCACGGGAGCACATAGAGATGGATTGGGCTCCTAATAGAGAAGTAAAGGTTTATCCGCTATCAAAGAAGTACACCTTTGCTTTGGCTTGTCGCTTGTTCATGAGCATAAAAGACCCTGAACAGGTCGCCAAGGTTGCTCATCCCTTCCATCTGATTACATCTGGGCTGGTGTCTGTGCCTATAGATTTTCCTGGTACGCCATTTAACCGTGCCAAGAAAGGAGGCAAAATGCTAAGGGATGAGCTTGTAGCAATCATTAAACAGAGAAGAAATGAGTTATCAGATGAGGGAGAACCAGAAGTCCAAGACCTGTTATCTTCGTTGCTTTTACAATCAGATGAGAACGGCAAGGGTTTGAATGACATGGAGATATCAGATAAAATTGTTGGTTTGTTTCTTGCTAGCTTTGATTCCACAAGTGCTACCTTAACATTCGTTTTGAACTATCTCGCAGAGTTCCCTGATGTCTATGATAAGGTCTTAAAAGAGCAAATGGAGATAGCAAAGTCCAAAGATCCAGGAGAGTTTCTGAAGTGGAATGACATTCAGAAGATGAAGTATACTTGGAGTGTGGCAAATGAAACAATGAGGTTAGCACCACCTGCCCAAGGAACTTTCCGAGAGGTCATAACTGACTTCACTTATGAAGGTTTTACCATTCCAAAGGGATGGAAGACATATTGGAGTGTACATACAACAAACAGAAACCCCAAGCACTTCCCAGACCCGGAGAAATTCGATCCCTCAAGATTTGAAGGAAAAGGCCCTGCACCATACACTTTTGTACCCTTTGGAGGAGGCCCTCGGCTGTGTCCAGGGAAGGAATATAGTCGACTGCAAATACTTGTATTTATCCATAATATGGTGACAAGGTTCAAATGGGAGAAAGTAGATCCAAATGAAAAGGTCATATATAACCCTTCTCCCATTCCAGTAAATGGTCTCCCGATCCGCCTCCATCCCCGTGAAAATAAGGTGATTTATAAGCATAGACGCAAATCCGCCTGTTCAAAGCTTCCCCCGGGTAAACTGGGATGGCCCATCATCGGGGAAACCTCAGAATTTGCTTTAGGAGGCAAAAATTCTAACCCTGAAAGATTTATAAATGATAGAATGAAGAAATACTCCCCAATTGTGTTCCGGACCTCCTTGTTGGGGGAGAAGGTCGCCGTGTTCTGTGGCCCAGCGGGGAACAAGTTTCTATTTTCAAACCACAACAAGCTCATTACCACTTGGAAACCACCATCGATGGAGAAGGCGTTGCTCTTCCAGTCTTCTCCCCCAAAGGCAGAACCGAGGGGAATGCGTAGCTTTGTCCTTGAATTTCTTAGGCCAGATGCTTTGCAACGTAACATACATATCATGGATTCAATGGCACACCAGAACATAAATACGGATTGGGCTCCTCATAAAGAAGTGAATGTTTATCCACTATCAAAGAAGTACACCTTCACATTGGCTTGTCACTTGTTCATAAGCATCAAAGATCCTGAGCATATCGCTAGGATTGCTCGTCCCTTCCATCAGATGTTATCTGGGCTCGTGTCTTTGCCTATAGATTTTCCTGGTACAGCATTTAACTCCGCCAAAAAAGGAGGCAAAATGCTTCGGCATGAGCTTGTAGCAATTATCAAGCAGAGAAGGAAGGAGTTATCAGAGAAAGAAGAATCGGTAGCCCGGGACCTACTATCTTCTTTGCTTTTAGCGACAGATGAGAACGGCGCGGTTCTGAATGACATGGAGATCTCTGATAAAATTGTTGGTATATTTCTTGCTAGCTTTGATTCAACAAGCACGACTTTAACATTTATCTTCAACTATCTAGCAGAGTTTCCTCATGCCTATGATAAGGTCTTAAAAGAACAAATGGAGATAGCAATGTCCAAAGATCCAGAAGAGTTTCTGAAGTGGAATGACATTCAGAAGATGAAGTATACTTGGTGTGTGGTGAAGGAAACAATGAGGCTAGCCCCACCTGCACAAGGAACTTTTCGAGAAGCCATAACTGACTTTACTTTTGAAGGTTTTACCATTCCAAAAGGGTGGAAGACATATTGGAGTGTACATTCTACAAACAAAAATCCCAAGTACTTTCCAGATCCAGAGAAATTCGATCCCTCGAGATTTGAAGGAAAGGGGCCTGCACCATACACTTTTGTACCTTTTGGAGGAGGACCTCGACTGTGTCCAGGGAAGGAATATGTTCGATTGGTAATACTAGTATTTATCCATAATATGGTGACAAGATTCAAATGGGCGAAAGTAGTTCCAAATGAAAAGATCATATATAACCCTTCACCATTTCCTGTGAATGGTCTCCCAATCCGCCTCCAGCCCCATGAGAAATAG 2802 44.04 MDLFSFLLHPILLSVSLCVVFLVRRYKSATAKLPPGNQGWPIIGETLAFALGSKSGNPTRFIKERMMKYSPDVFRTSLVGEKVAVFCGPAGNKFLFSNHNKLVATWKPRSMEKILLFESPPKVEPRGLRSYVLEFLRPDVLQRYIQIMDSMAREHIEMDWAPNREVKVYPLSKKYTFALACRLFMSIKDPEQVAKVAHPFHLITSGLVSVPIDFPGTPFNRAKKGGKMLRDELVAIIKQRRNELSDEGEPEVQDLLSSLLLQSDENGKGLNDMEISDKIVGLFLASFDSTSATLTFVLNYLAEFPDVYDKVLKEQMEIAKSKDPGEFLKWNDIQKMKYTWSVANETMRLAPPAQGTFREVITDFTYEGFTIPKGWKTYWSVHTTNRNPKHFPDPEKFDPSRFEGKGPAPYTFVPFGGGPRLCPGKEYSRLQILVFIHNMVTRFKWEKVDPNEKVIYNPSPIPVNGLPIRLHPRENKVIYKHRRKSACSKLPPGKLGWPIIGETSEFALGGKNSNPERFINDRMKKYSPIVFRTSLLGEKVAVFCGPAGNKFLFSNHNKLITTWKPPSMEKALLFQSSPPKAEPRGMRSFVLEFLRPDALQRNIHIMDSMAHQNINTDWAPHKEVNVYPLSKKYTFTLACHLFISIKDPEHIARIARPFHQMLSGLVSLPIDFPGTAFNSAKKGGKMLRHELVAIIKQRRKELSEKEESVARDLLSSLLLATDENGAVLNDMEISDKIVGIFLASFDSTSTTLTFIFNYLAEFPHAYDKVLKEQMEIAMSKDPEEFLKWNDIQKMKYTWCVVKETMRLAPPAQGTFREAITDFTFEGFTIPKGWKTYWSVHSTNKNPKYFPDPEKFDPSRFEGKGPAPYTFVPFGGGPRLCPGKEYVRLVILVFIHNMVTRFKWAKVVPNEKIIYNPSPFPVNGLPIRLQPHEK* 934
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 26310664 26319306 - Vvi18g1612 Vvi18g1612 781315

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1612 933 PANTHER BETA-AMYRIN 28-OXIDASE-LIKE 478 929 - -
Vvi18g1612 933 PANTHER BETA-AMYRIN 28-OXIDASE-LIKE 7 471 - -
Vvi18g1612 933 SUPERFAMILY Cytochrome P450 488 930 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi18g1612 933 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 415 424 IPR017972 GO:0005506|GO:0016705
Vvi18g1612 933 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 873 882 IPR017972 GO:0005506|GO:0016705
Vvi18g1612 933 Gene3D Cytochrome P450 479 931 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi18g1612 933 Gene3D Cytochrome P450 23 473 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi18g1612 933 PANTHER CYTOCHROME P450 26 7 471 - -
Vvi18g1612 933 PANTHER CYTOCHROME P450 26 478 929 - -
Vvi18g1612 933 PRINTS P450 superfamily signature 285 302 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi18g1612 933 PRINTS P450 superfamily signature 341 352 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi18g1612 933 PRINTS P450 superfamily signature 413 422 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi18g1612 933 PRINTS P450 superfamily signature 422 433 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi18g1612 933 Pfam Cytochrome P450 491 904 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi18g1612 933 Pfam Cytochrome P450 34 449 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi18g1612 933 SUPERFAMILY Cytochrome P450 30 473 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi18g1612 933 PRINTS E-class P450 group I signature 274 291 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi18g1612 933 PRINTS E-class P450 group I signature 294 320 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi18g1612 933 PRINTS E-class P450 group I signature 380 404 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi18g1612 933 PRINTS E-class P450 group I signature 412 422 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi18g1612 933 PRINTS E-class P450 group I signature 422 445 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1612 K20667 CYP716A; beta-amyrin 28-monooxygenase [EC:1.14.14.126] - vvi:100246475 965.681
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1612 . . . . Bpe02g00277 . . . . . . . . . . . . Bhi04g02592 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001106 4 2 2 4 4 2 1 2 2 1 2 2 1 0 1 0 2 4 1 2 1 11 0 2 2 2 3 2 1 17 80