Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1615 ATGTATATAATAATAACAACAAGATCACTTTCATTTCACACATGCTATATTAAATGGTTGTTGAAAGACAGACATTTGCTTATCTCAAAAATCAGGAAGGAATACCCTGATAGAATGATGCTCACATTCACTGTGTTCTCATCTCCAAAGGTCTCTGACACAGTCCTCTGTATGATATTTCTCAATTCCGACCTCCGGAAACCTGCGGTGAACCCCATTCCTTTCCCCCCTCTACACTTCTTCATGATGTGGGATGCCAAGAACATGATGTGTGCTGCAGACCCACGACATGGCCGCTACCTCACTGCCTCAGCTATGTTTAAGGGCAAGATGAGCACCAAAGAAGTGGAGGAACAAATGATTAATGCCCAAAACAAGAACTCTCCTTACTTTGTGGAATGGATTCCAAACAATGAAAATCAAACAGTCTCTGGAAATGAAGGAACCGGTACGGCGGGCACGGCTGGACCAAGAAAGGGCAGTTTTGAAAGAAAAAAAAAAGATTTATGGTGTTCCTGGAACTAA 525 42.29 MYIIITTRSLSFHTCYIKWLLKDRHLLISKIRKEYPDRMMLTFTVFSSPKVSDTVLCMIFLNSDLRKPAVNPIPFPPLHFFMMWDAKNMMCAADPRHGRYLTASAMFKGKMSTKEVEEQMINAQNKNSPYFVEWIPNNENQTVSGNEGTGTAGTAGPRKGSFERKKKDLWCSWN* 175
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 26388225 26396921 + Vvi18g1615 Vvi18g1615 781318

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1615 174 Gene3D - 79 154 IPR037103 -
Vvi18g1615 174 SMART Tubulin_C_4 61 163 IPR018316 -
Vvi18g1615 174 Pfam Tubulin C-terminal domain 83 143 IPR018316 -
Vvi18g1615 174 PANTHER TUBULIN 83 150 IPR000217 GO:0005874|GO:0007017
Vvi18g1615 174 PANTHER TUBULIN 26 56 IPR000217 GO:0005874|GO:0007017
Vvi18g1615 174 PANTHER TUBULIN 61 83 IPR000217 GO:0005874|GO:0007017
Vvi18g1615 174 PANTHER TUBULIN BETA-8 CHAIN 26 56 - -
Vvi18g1615 174 PANTHER TUBULIN BETA-8 CHAIN 61 83 - -
Vvi18g1615 174 PANTHER TUBULIN BETA-8 CHAIN 83 150 - -
Vvi18g1615 174 SUPERFAMILY Tubulin C-terminal domain-like 61 144 IPR008280 -
Vvi18g1615 174 MobiDBLite consensus disorder prediction 140 174 - -
Vvi18g1615 174 MobiDBLite consensus disorder prediction 159 174 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1615 K07375 TUBB; tubulin beta - mnt:21406387 144.05
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1615 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0070685 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1