Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1617 ATGGATCTCTTCTTTTCATATCTACTATACTTTATACTATTCTCCATATCACTTCTAATAGTCTTCCTTATTACTTACAGGCACAAATCCTCCTATCCAAACCTTCCCCCTGGGACAATGGGATGGCCAATCATAGGAGAAACTTTGGAATTTGCTTTGTCTTGTCAAGGGGGGAACCCGGGGAGATTCTTGAACGATAGAATGAACAAGTACTCCCCTCAAGTGTTCAAGACCTCCTTATTGGAAGCGAACATGGCTGTGATGTGCGGCCCTTCGGGGAACAAGTTTCTTTTCTCCAACGAGGACAAACTTGTAGTCTCATGGTGGCAGCGTTCAATGAAGAAGATTTTGTGCTTCCCATCTGTCTTCAACGAAACTTTAACAGGAGATAAGTTCAGACCCCCTACCTTCCTTCCTGAATTTCTCAAGCCAGAAGCTCTGCAACACTACATAGCCACCATGGATTCGATGGCAAGCGAACACATTGAGTTGAATTGGTCTCCTAATAGAGAGGTACTGGTTTTTCCGCTTGCAAGGAAGTACAGCTTTGCGTTGGCTTTCCGGCTCTTTATGAGCATTGATGATCCTGAGTATGTTGAGATGATTTCTCATCCCTTCCAGATTTTGAACGAAGGATTCCTTTCTGTGCCTATAGATATTCCTGGGACGACATTCAACTGGGCTCTCAAAGCCAGCAAATTCATTCACAATGAGCTTCTAGCAATCATCAGAAAGCGAAAGATGGAGTTAGAGCAGAAGGGAGACTCAGCTGCTAGAGACCTACTGTCTCACATGCTCTTAGCATCAGATGAAAACTGTTATGTTAAGAGTGAGATGGAGATCAGTACTCAAGTTATTTGTCTGCTTTTTGCTACCCATCACACCACAAGTTCTGTCATCACATTCATCCTCAAGTACCTGGCCGAGTTCCCTGATGTCTATAGCAAAGTCTTAAAAGAGCAAAAGGAGATTGCAAAGAGCAAAGGTCCGGAAGGGTTTCTGAAGTGGGATGACATTCAAAAGATGAAATATACTTGGAATGTGGCAAATGAAACAATGAGGCTAACCCCACCTGTGCAAGGAACTTTTAGAGAAGCCATAACTGACATCACTTATGCAGGTTTTACAATTCCAAGGGGATGGAAGATGCATTGGAATGTAAATACAACACATAGAGATCCCAAGTATTTTCCTGATCCCGAGAAATTCAATCCCTCGAGGTTTGAAGGAAAAGGGCCTCAACCATTCACTTTTGTGCCTTTTGGGGGAGGGCCTCGGATGTGCCCCGGAAGGGAATATGCTCGAGCGCAGGTACTTGCATTCATACATCATGTGGTGACAAGATTCAAATGGGAGAAAGTAGATCCCTGTGAAAAGGTTGCATATAATCCATCACCCATTCCTTCTAAGGGCTTCCCAATTCGCCTCCAGCCTCTACAAAATGGATCTATTTAA 1455 43.64 MDLFFSYLLYFILFSISLLIVFLITYRHKSSYPNLPPGTMGWPIIGETLEFALSCQGGNPGRFLNDRMNKYSPQVFKTSLLEANMAVMCGPSGNKFLFSNEDKLVVSWWQRSMKKILCFPSVFNETLTGDKFRPPTFLPEFLKPEALQHYIATMDSMASEHIELNWSPNREVLVFPLARKYSFALAFRLFMSIDDPEYVEMISHPFQILNEGFLSVPIDIPGTTFNWALKASKFIHNELLAIIRKRKMELEQKGDSAARDLLSHMLLASDENCYVKSEMEISTQVICLLFATHHTTSSVITFILKYLAEFPDVYSKVLKEQKEIAKSKGPEGFLKWDDIQKMKYTWNVANETMRLTPPVQGTFREAITDITYAGFTIPRGWKMHWNVNTTHRDPKYFPDPEKFNPSRFEGKGPQPFTFVPFGGGPRMCPGREYARAQVLAFIHHVVTRFKWEKVDPCEKVAYNPSPIPSKGFPIRLQPLQNGSI* 485
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 26414511 26416346 + Vvi18g1617 Vvi18g1617 781320

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1617 484 PRINTS E-class P450 group I signature 280 297 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi18g1617 484 PRINTS E-class P450 group I signature 300 326 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi18g1617 484 PRINTS E-class P450 group I signature 386 410 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi18g1617 484 PRINTS E-class P450 group I signature 418 428 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi18g1617 484 PRINTS E-class P450 group I signature 428 451 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi18g1617 484 PRINTS P450 superfamily signature 291 308 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi18g1617 484 PRINTS P450 superfamily signature 347 358 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi18g1617 484 PRINTS P450 superfamily signature 419 428 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi18g1617 484 PRINTS P450 superfamily signature 428 439 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi18g1617 484 PANTHER BETA-AMYRIN 28-OXIDASE-LIKE 13 477 - -
Vvi18g1617 484 Pfam Cytochrome P450 36 453 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi18g1617 484 SUPERFAMILY Cytochrome P450 26 478 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi18g1617 484 PANTHER CYTOCHROME P450 26 13 477 - -
Vvi18g1617 484 Gene3D Cytochrome P450 24 479 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi18g1617 484 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 421 430 IPR017972 GO:0005506|GO:0016705
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1617 K20667 CYP716A; beta-amyrin 28-monooxygenase [EC:1.14.14.126] - vvi:100255183 976.467
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1617 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001106 4 2 2 4 4 2 1 2 2 1 2 2 1 0 1 0 2 4 1 2 1 11 0 2 2 2 3 2 1 17 80