Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1618 ATGAGAGAAAAATTAGAGCACCAAAAAAGAGAAGAAAAAAGTTGGAATACAGACTGTAATGTGATCTTAGTAGAAGGGAAGTTCAGTAAAGTAAAAGACATGGATCTCTTCTTCTCATATCTACTTTACCTTATAGTACTCTCCACTATATCTCTTGGCATAATCTTCCTTGCTTATCACCACAAATCTTCCAATTCAAAGCTTCCCCCTGGTAGAAAAGGCTGGCCCATCATCGGGGAAACAATGCAGTTTGCCTTAGCAGCTCAAAGGGGAAATCCAGAGAGGTTCATAAATGATAGAATGAACAAGTACTCCCCTGAAGTATTCCGGATCTCCTTGATGGAAGAGAACATGGCTGTGATGTGTGGTGCACCAGGGAACAAGTTTTTCTTCTCCAATGAGAATAAGCTTGTCACCTCGTGGTGGCACCGCTCCATGAAGAAGATTTTGTACTTCCCCTCGCTTTTTGATAACCCTGCAACACAAGATCAGATCAAAACTCCTAGCTTTCTTCCAGAATTTCTCAAGCCAGAAGCTCTGAAACACTATGTAGCCATCATGGATTTGATGGCAGGTATGCACATAGATATGGATTGGGCTCCTTATAGAGAAGTGAAGGTTTTTCCACTCGTAAAGAAGTATGCCTTCGCATTATCTTGCCGGTTGTTTATGAAGGTTGATGATCCTCAGTGTGTTGCCAGAATTTCTCATCCTTTCGAACTTATTATGGCTGGGTTCCTTTCTGTACCTTTAGATATTCCTGGTACAGCATTCAACCGGGCTATCAAAGCACGCAACATCGTCCACAAAGAGCTTCTAGCAATCATCAACAAGAGGAAAATGGAATTAGGACAGAAAGGAAACTCAGCAGCCAGAGACTTTCTGTCCCACATGCTTTTAGAAGCAAATAAGAATGGTGAGATTATGAGTGAAACGGAGATCAGTACTCACCTTATTTGTCTACTGCTGGCAACCCATGACAGCACAAGTGCGGTTATCACATTTGTTCTCAAGTATCTGGCAGAGTTTCCCAGTATCTATAATGAAGTCTTTAAAGAACAAATGGAGATCGCAAAGGGCAAGGGCTCAGAAGAATATCTGAACTGGGATGACATTCAAAAGATGAGATATTCTTGGAATGTGGCAAATGAAACAATGAGGCTAACGCCACCTGTTCAAGGAGCCTTTAGGGAAGTCATTAAAAACTTCACTTACGCAGGTTTTACTATGCCAAAGGGATGGAAGACACATTGGAACGTGAATACAACACACAGAAATCCCAAATACTTTCCAGATCATGAGAAATTTGATCCCTCAAGATTTGAAGGAAGAGGACCTGAACCATTCACTTTTGTACCCTTTGGGGGAGGACCTCGGATGTGCCCAGGAAGGGAATATGCTCGAGCTCAAAAAATATATATTGATTTAGGACTTGATAACGGAACCATGTAA 1452 41.6 MREKLEHQKREEKSWNTDCNVILVEGKFSKVKDMDLFFSYLLYLIVLSTISLGIIFLAYHHKSSNSKLPPGRKGWPIIGETMQFALAAQRGNPERFINDRMNKYSPEVFRISLMEENMAVMCGAPGNKFFFSNENKLVTSWWHRSMKKILYFPSLFDNPATQDQIKTPSFLPEFLKPEALKHYVAIMDLMAGMHIDMDWAPYREVKVFPLVKKYAFALSCRLFMKVDDPQCVARISHPFELIMAGFLSVPLDIPGTAFNRAIKARNIVHKELLAIINKRKMELGQKGNSAARDFLSHMLLEANKNGEIMSETEISTHLICLLLATHDSTSAVITFVLKYLAEFPSIYNEVFKEQMEIAKGKGSEEYLNWDDIQKMRYSWNVANETMRLTPPVQGAFREVIKNFTYAGFTMPKGWKTHWNVNTTHRNPKYFPDHEKFDPSRFEGRGPEPFTFVPFGGGPRMCPGREYARAQKIYIDLGLDNGTM* 484
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 26421125 26423185 - Vvi18g1618 Vvi18g1618 781321

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1618 483 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 454 463 IPR017972 GO:0005506|GO:0016705
Vvi18g1618 483 SUPERFAMILY Cytochrome P450 59 470 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi18g1618 483 PRINTS P450 superfamily signature 324 341 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi18g1618 483 PRINTS P450 superfamily signature 380 391 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi18g1618 483 PRINTS P450 superfamily signature 452 461 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi18g1618 483 PRINTS P450 superfamily signature 461 472 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi18g1618 483 PANTHER CYTOCHROME P450 26 45 470 - -
Vvi18g1618 483 Gene3D Cytochrome P450 58 473 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi18g1618 483 Pfam Cytochrome P450 69 469 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi18g1618 483 PRINTS E-class P450 group I signature 333 359 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi18g1618 483 PRINTS E-class P450 group I signature 419 443 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi18g1618 483 PRINTS E-class P450 group I signature 451 461 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi18g1618 483 PANTHER BETA-AMYRIN 28-OXIDASE-LIKE 45 470 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1618 K20667 CYP716A; beta-amyrin 28-monooxygenase [EC:1.14.14.126] - vvi:100260260 903.664
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1618 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001106 4 2 2 4 4 2 1 2 2 1 2 2 1 0 1 0 2 4 1 2 1 11 0 2 2 2 3 2 1 17 80