Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g162 ATGGATATGCGATTCCCGTACTCTCCGGCAGAGGTCGCCAAAGTCCGCATGGTTCAGTTTGGCATACTCAGTCCCGATGAAATCAGACAAATGTCGGTTGTACAGATCGAGCACAGTGAGACAACAGAGAGAGGAAAGCCGAAGCCAGGAGGGCTGAGCGATCCTCGGCTCGGTACAATTGACAGAAAGATGAAGTGCGAGACCTGCACAGCGAACATGGCCGAATGTCCTGGGCATTTCGGTCACCTAGAACTTGCTAAACCTATGTTCCACATCGGGTTTATGAAAACTGTCCTCAGTATTATGCGGTGTGTTTGCTTCAATTGTTCGAAAATCCTCGCAGATGAGCTAACTGAAAATGTGAAATGGATATCTAAATCCAAATTTGCCAACATGAAATCCTTAAAGCTAGGTCATTCACTCCTTCACTGTAAAAGCGAGGATCACAAGTTTAAGCAAGCCCAGAAAATCAGAAATCCCAAAAATAGACTAAAGAAAATTTTGGATGCCTGTAAGAACAAAAGCAAATGTGAAGGTGGTGATGAAATTGAGACACAAGCTCTAGATTCTGATGAACCAGTTAAAAAGAGTCGAGGAGGTTGCGGTGCTCAGCAACCAAAGCTTACTATTGAAGGTATGAAAATGATTGCTGAATACAAGATTCAAAGGAAGAAAAATGATGACCCAGAACAACTTCCTGAACCTGTTGAAAGAAAACAGCAGCTTTCTGCTGAAAGGGTGCTTAATGTCTTGAAGAGAATAAGCGATGAAGACTGCATTTTGTTGGGACTAAATCCCAAATATGCTCGTCCAGATTGGATGATTTTGCAAGTGCTCCCGATTCCACCACCTCCAGTGAGGCCATCTGTAATGATGGATACTTCATCACGGAGTGAGGCAAGCCTTTCTGTTCTAGTAAATGATAGGTTAAAGTTGTCAATGTGGTTATGGGATGACTTAACCCATCAGTTGGCAATGATCATTAGGCATAATGAGAATCTGAGGAGACAGGAGAGAAATGGGGCTCCTGCACACATAATCTCAGAATTTGCACAGCTACTGCAGTTTCATGTGGCTACATATTTTGATAATGAGCTTCCTGGACAACCTAGGGCTACACAGAGGTCTGGCCGCCCTATTAAATCTATATGCAGTCGGCTTAAGGCTAAGGAGGGTAGGATCAGAGGAAACCTGATGGGGAAACGTGTAGACTTCTCAGCTCGGACTGTTATCACACCTGATCCTACTATTAACATCGATGAACTGGGAGTACCATGGAGTATTGCTTTAAATTTAACTTATCCAGAAACTGTGACTCCTTACAACATTGAAAGGTTGAAGGAGCTTGTGGAATATGGACCCCATCCTCCACCTGGTAAAACTGGTGCCAAGTATATCATAAGGGAAGATGGTCAGAGGCTTGATCTCCGATATTTGAAGAAAAGTAGCGATCATCACCTGGAACTTGGATACAAGGTGGAGCGACACTTAAATGATGGGGATTTTGTTCTCTTCAATAGACAGCCAAGTCTGCATAAAATGTCTATTATGGGGCATAGAATCAAGATCATGCCATACTCAACCTTCCGGTTGAATTTGTCTGTTACATCCCCATATAATGCAGATTTTGATGGAGATGAAATGAATATGCATGTTCCTCAGTCATTTGAAACAAGAGCAGAGGTTTTGGAGCTGATGATGGTCCCTAAATGCATTGTGTCACCTCAATCAAATCGACCAGTTATGGGTATCGTCCAGGATACACTTTTGGGTTGCCGCAAGATCACTAAGAGAGATACCTTCATTGAGAAGGATGTTTTTATGAATATCTTGATGTGGTGGGAGGATTTTGATGGGAAAATACCTGCACCGGCAATCTTGAAGCCTAGACCACTATGGACAGGAAAGCAAGTGTTCAATCTTATCATTCCTAAGCAGATAAATCTTTTGAGAACATCGGCCTGGCACTCAGAATCTGAAACTGGCTTCATAACTCCTGGAGATACTCAAGTTCGAATAGAGAAAGGGGAGCTTCTTGCTGGCACTCTTTGCAAGAAAACCCTTGGGACATCCACTGGAAGTCTTATACATGTAATTTGGGAGGAGGTTGGCCCAGATGCTGCTCGCAAGTTCTTGGGACACACTCAGTGGCTTGTTAACTATTGGCTTTTGCAGAATGGTTTTAGCATTGGCATTGGAGACACAATTGCTGATGCAGCAACCATGGAAAAGATTAATGAAACTATATCTAAAGCCAAGAATGAAGTGAAAGAACTTATTAGGGCTGCCCAAGAAAGACAGTTAGAAGCGGAGCCTGGGCGGACTATGATGGAATCATTTGAGAACAGAGTGAACCAGGTGTTGAATAAAGCCCGTGATGATGCAGGAAGTAGTGCTCAGAAGAGCTTGTCAGAAAGTAACAATCTCAAGGCAATGGTTACTGCTGGGTCAAAAGGAAGTTTTATCAACATATCACAGATGACTGCTTGTGTGGGACAGCAGAATGTTGAGGGTAAGCGAATCCCATATGGCTTCATAGATCGAACGCTTCCCCATTTCACCAAAGATGACTACGGACCTGAAAGTCGAGGATTTGTCGAAAACTCTTATCTGCGTGGGTTGACCCCTCAAGAATTCTTTTTTCATGCTATGGGTGGTAGGGAAGGTTTGATTGATACTGCAGTCAAAACTTCTGAGACTGGATATATCCAGAGGCGGCTTGTGAAGGCTATGGAAGATATTATGGTCAAATATGATGGTACTGTTAGGAACTCATTGGGGGATGTTATCCAGTTTTTGTATGGTGAAGATGGTATGGATGCAGTGTGGATTGAAACACAGAAGCTGGATTCACTTAAAATGAAGAAGGGTGAATTTGATAGAGTGTTCAAATATGAGATTGATGATGAGAATTGGAATCCAAGCTACATGTTGCCAGAACATAGGCTCATTTGGAATGCACAAAAAACATTTAAAGAGAGGCTGAAGATAGAATCACGCTTCCTGCAGTCGCTTGTCGCCCCTGGAGAAATGATTGGTTGCGTTGCTGCCCAGTCCATTGGTGAGCCTGCAACACAGATGACCCTGAACACTTTCCACTACGCTGGTGTGAGTGCCAAGAACGTCACTCTTGGTGTTCCCAGGTTGAGGGAAATTATTAATGTGGCTAAAAAAATAAAAACCCCATCTCTCTCTGTCTACTTGAAGCCTGACGTTAGCAAAACCAAGGAGAGAGCAAAGAATGTCCAATGTGCTTTGGAATACACTACCTTGCGGAGTGTAACACAAGCTACTGAGAAAATTTCTCCCTGGCTACTCCGTATAGAGCTGAATCGGGAGATGATGTTGCAGGATGAATCTGCTGAAGATGATGTTTTCCTCAAGAAGATTGAGAAGGTGGAATGGATGCTTGATACTGAAGGTGTCAATCTTTTAGCTGTTATGTGTCATGAAGATGTTGATGCTAGGAGGACAACTAGTAATCACTTGATTGAAGTAATTGAAGTTCTTGGAATTGAGGCGGTTCGTCGGTCCCTGTTAGATGAGTTGCGAGTGGTCATTTCATTCGATGGATCTTATGTAAATTACAGGCACTTGGCTATTCTGTGTGATACCATGACATACCGCGGTCACTTGATGGCCATCACGCGTCATGGTATCAATCGGAATGATACTGGGCCAATGATGAGATGCTCATTTGAAGAGACAGTGGACATCCTTCTTGATGCTGCTGTCTATGCTGAAACTGATTTTTTGAGGGGTGTTACAGAAAATATCATGTTAGGTCAGCTGGCACCCATTGGTACAGGAGATTGTGCCCTGTACCTAAATGATCAGATGCTTCAGCATGCTATAGAACTTCAGCTCCCAAGTTATATGGAAGGTTTGGATTTTGGCATGACACCTTCCCGTTCACCAATCACGGGATATAGTCCATCATCTCCTGGTTATAGCCCTACTTCTCCTGGCTACAGTCCAACCTCCCCAGGATACAGCCCCACTTCACCTGGTTACAGCCCTACCTCACCTACATACAGTCCCAGCTCTCCTGGATATAGTCCAACAAGTCCTGCATATTCTCCCACAAGTCCATCTTACTCCCCAACCTCACCCAGCTACAGCCCCACATCCCCCAGCTACAGCCCCACATCTCCCAGTTACAGTCCTACATCTCCAAGCTACACCCCACTTCTCCTGCATACAGCCCCACTTCTCCTGCTTACAGCCCCACCTCACCTTCCTATAGCCCAACCTCACCTTCCTATAGCCCGACCTCACCATCCTATAGCCCAACCTCACCTTCTTATAGTCCAACCTCTCCATCATACAGCCCCACCTCTCCGCTACAGCCCTACATCACCTAGTTATAATCCTTCCTCAGCAAAATACAGCCCATCACTGGCATATTCTCCCAGCAGTCCAAGACTATCTCCATCAAGCCCTTACAGTCCGACATCACCAAATTACAGTCCAACATCACCATCATATTCACCTACATCTCCCTCTTATTCACCTGCAAGTCCAACATACAGCCCTACCAGCCCTTACAATTCTGGTGTGAGCCCGGATTACAGCCCAAGCTCTCCACAGTACAGTCCAAGTGCGGGTTATTCACCAAGTGCACCTGGTTACTCGCCATCTTCTACCAGCCAGTACACTCCGCAGATGAGCAATAAGGATAATGGGAGTCCTCAGTAG 4698 44.59 MDMRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHSETTERGKPKPGGLSDPRLGTIDRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRCVCFNCSKILADELTENVKWISKSKFANMKSLKLGHSLLHCKSEDHKFKQAQKIRNPKNRLKKILDACKNKSKCEGGDEIETQALDSDEPVKKSRGGCGAQQPKLTIEGMKMIAEYKIQRKKNDDPEQLPEPVERKQQLSAERVLNVLKRISDEDCILLGLNPKYARPDWMILQVLPIPPPPVRPSVMMDTSSRSEASLSVLVNDRLKLSMWLWDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHVATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIREDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKIPAPAILKPRPLWTGKQVFNLIIPKQINLLRTSAWHSESETGFITPGDTQVRIEKGELLAGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNGFSIGIGDTIADAATMEKINETISKAKNEVKELIRAAQERQLEAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPYGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIETQKLDSLKMKKGEFDRVFKYEIDDENWNPSYMLPEHRLIWNAQKTFKERLKIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYLKPDVSKTKERAKNVQCALEYTTLRSVTQATEKISPWLLRIELNREMMLQDESAEDDVFLKKIEKVEWMLDTEGVNLLAVMCHEDVDARRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDFLRGVTENIMLGQLAPIGTGDCALYLNDQMLQHAIELQLPSYMEGLDFGMTPSRSPITGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYTPLLLHTAPLLLLTAPPHLPIAQPHLPIARPHHPIAQPHLLIVQPLHHTAPPLRYSPTSPSYNPSSAKYSPSLAYSPSSPRLSPSSPYSPTSPNYSPTSPSYSPTSPSYSPASPTYSPTSPYNSGVSPDYSPSSPQYSPSAGYSPSAPGYSPSSTSQYTPQMSNKDNGSPQ* 1566
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 1602590 1612334 - Vvi18g162 Vvi18g162 779865

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g162 1565 ProSitePatterns Eukaryotic RNA polymerase II heptapeptide repeat. 1366 1372 IPR000684 GO:0003677|GO:0006366
Vvi18g162 1565 PANTHER DNA-DIRECTED RNA POLYMERASE SUBUNIT 1133 1308 - -
Vvi18g162 1565 PANTHER DNA-DIRECTED RNA POLYMERASE SUBUNIT 996 1099 - -
Vvi18g162 1565 Pfam RNA polymerase Rpb1 C-terminal repeat 1450 1463 IPR000684 GO:0003677|GO:0006366
Vvi18g162 1565 Pfam RNA polymerase Rpb1 C-terminal repeat 1339 1352 IPR000684 GO:0003677|GO:0006366
Vvi18g162 1565 Pfam RNA polymerase Rpb1 C-terminal repeat 1346 1359 IPR000684 GO:0003677|GO:0006366
Vvi18g162 1565 Pfam RNA polymerase Rpb1 C-terminal repeat 1332 1345 IPR000684 GO:0003677|GO:0006366
Vvi18g162 1565 Pfam RNA polymerase Rpb1 C-terminal repeat 1305 1317 IPR000684 GO:0003677|GO:0006366
Vvi18g162 1565 Pfam RNA polymerase Rpb1 C-terminal repeat 1511 1524 IPR000684 GO:0003677|GO:0006366
Vvi18g162 1565 Pfam RNA polymerase Rpb1 C-terminal repeat 1318 1331 IPR000684 GO:0003677|GO:0006366
Vvi18g162 1565 Pfam RNA polymerase Rpb1 C-terminal repeat 1483 1496 IPR000684 GO:0003677|GO:0006366
Vvi18g162 1565 Pfam RNA polymerase Rpb1 C-terminal repeat 1353 1366 IPR000684 GO:0003677|GO:0006366
Vvi18g162 1565 Pfam RNA polymerase Rpb1 C-terminal repeat 1360 1373 IPR000684 GO:0003677|GO:0006366
Vvi18g162 1565 Pfam RNA polymerase Rpb1 C-terminal repeat 1374 1387 IPR000684 GO:0003677|GO:0006366
Vvi18g162 1565 Pfam RNA polymerase Rpb1 C-terminal repeat 1367 1380 IPR000684 GO:0003677|GO:0006366
Vvi18g162 1565 Pfam RNA polymerase Rpb1 C-terminal repeat 1381 1394 IPR000684 GO:0003677|GO:0006366
Vvi18g162 1565 Pfam RNA polymerase Rpb1 C-terminal repeat 1497 1510 IPR000684 GO:0003677|GO:0006366
Vvi18g162 1565 Gene3D RNA polymerase ii 432 494 - -
Vvi18g162 1565 ProSitePatterns Eukaryotic RNA polymerase II heptapeptide repeat. 1373 1379 IPR000684 GO:0003677|GO:0006366
Vvi18g162 1565 SUPERFAMILY beta and beta-prime subunits of DNA dependent RNA-polymerase 5 1280 - -
Vvi18g162 1565 CDD RNAP_II_RPB1_N 18 919 - -
Vvi18g162 1565 Gene3D - 734 852 IPR038120 -
Vvi18g162 1565 Gene3D - 1228 1271 - -
Vvi18g162 1565 MobiDBLite consensus disorder prediction 1448 1476 - -
Vvi18g162 1565 ProSitePatterns Eukaryotic RNA polymerase II heptapeptide repeat. 1380 1386 IPR000684 GO:0003677|GO:0006366
Vvi18g162 1565 PANTHER DNA-DIRECTED RNA POLYMERASE SUBUNIT 1 123 - -
Vvi18g162 1565 ProSitePatterns Eukaryotic RNA polymerase II heptapeptide repeat. 1359 1365 IPR000684 GO:0003677|GO:0006366
Vvi18g162 1565 MobiDBLite consensus disorder prediction 1489 1565 - -
Vvi18g162 1565 Gene3D RNA polymerase II, clamp domain 316 363 IPR044893 -
Vvi18g162 1565 Gene3D RNA polymerase II, clamp domain 4 127 IPR044893 -
Vvi18g162 1565 CDD RNAP_II_Rpb1_C 981 1277 - -
Vvi18g162 1565 Pfam RNA polymerase Rpb1, domain 5 873 1226 IPR007081 GO:0003677|GO:0003899|GO:0006351
Vvi18g162 1565 ProSitePatterns Eukaryotic RNA polymerase II heptapeptide repeat. 1482 1488 IPR000684 GO:0003677|GO:0006366
Vvi18g162 1565 Pfam RNA polymerase Rpb1, domain 1 14 398 IPR007080 GO:0003677|GO:0003899|GO:0006351
Vvi18g162 1565 PANTHER DNA-DIRECTED RNA POLYMERASE 1 123 IPR045867 GO:0003899|GO:0006351
Vvi18g162 1565 Coils Coil 742 769 - -
Vvi18g162 1565 SMART rpolaneu7 272 596 IPR006592 GO:0003677|GO:0003899|GO:0006351
Vvi18g162 1565 Gene3D - 853 911 - -
Vvi18g162 1565 Pfam RNA polymerase Rpb1, domain 4 764 866 IPR007083 GO:0003677|GO:0003899|GO:0006351
Vvi18g162 1565 MobiDBLite consensus disorder prediction 1446 1565 - -
Vvi18g162 1565 Gene3D - 388 568 - -
Vvi18g162 1565 Pfam RNA polymerase Rpb1, domain 3 572 735 IPR007066 GO:0003677|GO:0003899|GO:0006351
Vvi18g162 1565 Gene3D RNA polymerase Rpb1, domain 3 572 729 IPR042102 -
Vvi18g162 1565 Pfam RNA polymerase Rpb1, domain 2 400 568 IPR000722 GO:0003677|GO:0003899|GO:0006351
Vvi18g162 1565 ProSitePatterns Eukaryotic RNA polymerase II heptapeptide repeat. 1489 1495 IPR000684 GO:0003677|GO:0006366
Vvi18g162 1565 MobiDBLite consensus disorder prediction 1304 1393 - -
Vvi18g162 1565 ProSitePatterns Eukaryotic RNA polymerase II heptapeptide repeat. 1496 1502 IPR000684 GO:0003677|GO:0006366
Vvi18g162 1565 PANTHER DNA-DIRECTED RNA POLYMERASE SUBUNIT 141 965 - -
Vvi18g162 1565 PANTHER DNA-DIRECTED RNA POLYMERASE 1133 1308 IPR045867 GO:0003899|GO:0006351
Vvi18g162 1565 Gene3D - 1058 1152 IPR038593 -
Vvi18g162 1565 MobiDBLite consensus disorder prediction 38 57 - -
Vvi18g162 1565 Gene3D - 912 963 - -
Vvi18g162 1565 PANTHER DNA-DIRECTED RNA POLYMERASE 996 1099 IPR045867 GO:0003899|GO:0006351
Vvi18g162 1565 PANTHER DNA-DIRECTED RNA POLYMERASE 141 965 IPR045867 GO:0003899|GO:0006351
Vvi18g162 1565 Pfam RNA polymerase Rpb1, domain 6 939 981 IPR007075 GO:0003677|GO:0003899|GO:0006351
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g162 K03006 RPB1, POLR2A; DNA-directed RNA polymerase II subunit RPB1 [EC:2.7.7.6] - oeu:111409453 2047.32
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g162 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone12ag0842 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004033 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 0 1 1 5 6 1 43