Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1621 ATGGAGTGCCAGAAAGAAAAGGGACAAATAGTTTATCCCGTTTTCTATCACGTACGGCCGTGTGAAGTCAGGAACCAGTATGGGACTTATGGAGAAGAATTTAAGAAACACGAGAGCAATGCGGACGAGGAGAAGAAGAAGAAAATAGGGGAGTGGAGGACTGCCTTAAGGAAAGCCGGTGATTTGAGTGGATTTAGTCTGCGGGATAGATCTGAGGCAGAGTTTATTGAAGAAATCATTGGTGAGATTCGAAGATTAATTCCTAAGTGGGTACATGTTGGTGAGAATATTGTTGGAATGGATGAAAATTTGAAAAAAGTGAAGTTATTGATAGATGCCCAATCAAATAAAGTGAGTATGGTTGGGATTTATGGGACTGGTGGGATTGGTAAAACTACCATCGCCAAGGTTGTTTACAATGATATGTTAGATCAATTTAAATGTCACAGCTTTCTTGAAAATGTGAGAGAGAAATATGAAGATAAAGGTGATTTGCTTCAATTACAAAAAGAACTTCTTTGTGATATCCTAATGGAGAAAAATCTGGTGTTAAGGAATATTGATGAAGGATTTAAAAAGATAAAGAGTAAGCGTCACTCTGAAAAGGTTCTTATTGTTCTTGATGATGTAGGTTGTGAAGAACAATTAAAATTCTTAGCTCCTAATTCTGAATGTTTTCATCCAGGAAGCATAATCATTGTGACCACGAGAAATAAGCGTTGCCTAGATGTATATGACTCGTATTCATCATATGAGGCTAAGAGAATGGCAGACAAGCAAGCTGAGGAACTCTTTTGTTGGAATGCCTTCAAGCAAGACCATCCCATAGAAAATTTTGTGGGCCTCTCTAATCGTATACTGGATTATGCTGACGGCCTTCCATTGGCTCTTGTAGTTTTGGGTTCTTTTCTCTTTCAAAGGCCTATGGATGAATGGGAAAGCACATTGGATGAACTCAAAACAATCCCTCCCGAGAATATTCAAAAGGTACTCCAGATAAGTTATGATGGACTAAGTGATGAACGCAAGAAGTTGTTTCTTTATATTGCATGCTTCTTCAAAGATGAGGATGAAAAAATGGCAACAAGAATACTAGAAAGTTGCAAATTACATCCCGCTATTGGACTAAGAGTTCTTCATGAGAGGTGTCTTATTTCTATAGAGGACAACACTATAAGGATGCATGACTTGTTACAAGAAATGGGTTGGGCAATTGTTTGCAATGATCCAGAACGTCCAGGAAAATGGAGCAGATTGTGCGAATTACAGGATATTGAAAGTGTATTATCACAAAATGAGTGGACAAAAAACATTGAGGGGATTTTCACAAGTCAGTCTCGCCATACAGGAAAACATATACAACTTACTACTGAAGTTTTCAGAAATATGAATCAACTTAGATTGCTCAAAGTCGAATTCAATCAGATCGTGCAGCTTTCCCAAGACTTTGAATTGCCTTGTCATGATTTAGTATATTTTCATTGGGATTACTACCCTTTAGAATATTTGCCATCAAATTTTCATACAGACAATCTTGTTGAACTCAACCTCTGGTGTAGCCGCATAAAACATCTTTGGGAAGGAAATATGCCTGCTAAAAAGTTAAAAGTCATTGATCTTAGTTATTCCATGCATCTGGTTGACATTTCAAGCATCTCAAGTATGCCAAATTTGGAGACTCTAACTCTAAAAGGGTGCACGAGACTTAAGAGTCTTCCAAGGAACTTTCCTAAGTTGGAATGCCTTCAAACACTCTCTTGTTGTGGCTGTTCAAACTTAGAGAGTTTTCCGAAGATCGAGGAAGAAATGAGAAGTCTAAGAAAGCTTAATTTAAGTCAAACAGGTATAATGGGATTACCATCATCAATTAGCAAGCTAAATGGGCTTAAAGAGTTGGACTTAAGTAGTTGCAAAAAGCTTTCGAGTCTTCCGGACAGTATTTATAGTTTGAGCTCTCTTCAAACTCTCAATCTATTTGCATGTTCACGACTAGTGGGCTTTCCGGGTATCAATATTGGAAGTCTAAAAGCTCTTAAATACTTGGATTTGTCATGGTGTGAGAACCTTGAGAGTCTTCCGAATAGTATTGGTAGTTTGAGCTCTCTTCAAACTCTTTTATTGATAGGGTGTTCAAAACTGAAGGGCTTTCCAGATATCAATTTTGGAAGTCTAAAAGCTCTTGAATCGTTAGATTTCTCAGGTTGCAGAAACCTTGAGAGTCTTCCCGTGAGCATTTACAATGTAAGCTCTCTCAAAACTTTGGGGATTACAAATTGTCCAAAACTCGAGGAAATGTTAGAGATGAAACTAGGGGTTGATCCATGCCCCTGGCCATTTTCACCTCTAACCTGTCACATTTCAAATTCAGCAATAATCTGGGATGATCACTGGCATGACTGCTTTTCCTCATTAGAAGCATTAGACTCACAGTGCCCCCTGTCATCACTGGTAGAATTATCTGTAAGAAAGTTTTATGACATGGAAGAAGACATCCCCATTGGCAGTTCCCACCTAACCTCATTGGAAATATTATCTCTGGGGAACGTCCCTACAGTAGTAGAAGGAATCCTCTATGACATTTTCCATCTATCTTCATTGGTAAAATTATCTCTTACTAAATGCAAGCCAACAGAAGAAGGAATCCCCCGTGATATTCAGAACCTATCTCCACTGCAACAATTATCTCTACATGACTGCAATCTAATGAAAGGAACGATCCTCGATCATATTTGCCATCTAACATCCTTGGAAGAATTATATCTGGGTTGGAACCATTTTAGTAGCATTCCTGCTGGCATCAGTCGACTTTCCAATCTAAAAGCCCTTGACTTGAGTCACTGCAAGAAGCTTCAACAAATTCCAGAGCTTCCATCTAGTCTACGATTTTTAGATGCGCACTGTCCGGATCGTATTTCATCAAGCCCCTTGCTTCTACCTATTCATTCTATGGTCAATTGCTTCAAATCAAAAATTGAGGGGCGCAAGGTTATTAATAGCTCCCTCCGAATTGGTATAAAAATGATGACTTGTGGGGATTTGCTTTATGCTGTGTTTATGTTGCACCTGCCTGTAAATCTGAGGATGAATCTCAGTATGAATCAGGTCTTATATCTGAGGATGACAGTGACCTTAAAGATGAAGAAGCAAGCTTTTATTGTGAATTGA 3165 38.55 MECQKEKGQIVYPVFYHVRPCEVRNQYGTYGEEFKKHESNADEEKKKKIGEWRTALRKAGDLSGFSLRDRSEAEFIEEIIGEIRRLIPKWVHVGENIVGMDENLKKVKLLIDAQSNKVSMVGIYGTGGIGKTTIAKVVYNDMLDQFKCHSFLENVREKYEDKGDLLQLQKELLCDILMEKNLVLRNIDEGFKKIKSKRHSEKVLIVLDDVGCEEQLKFLAPNSECFHPGSIIIVTTRNKRCLDVYDSYSSYEAKRMADKQAEELFCWNAFKQDHPIENFVGLSNRILDYADGLPLALVVLGSFLFQRPMDEWESTLDELKTIPPENIQKVLQISYDGLSDERKKLFLYIACFFKDEDEKMATRILESCKLHPAIGLRVLHERCLISIEDNTIRMHDLLQEMGWAIVCNDPERPGKWSRLCELQDIESVLSQNEWTKNIEGIFTSQSRHTGKHIQLTTEVFRNMNQLRLLKVEFNQIVQLSQDFELPCHDLVYFHWDYYPLEYLPSNFHTDNLVELNLWCSRIKHLWEGNMPAKKLKVIDLSYSMHLVDISSISSMPNLETLTLKGCTRLKSLPRNFPKLECLQTLSCCGCSNLESFPKIEEEMRSLRKLNLSQTGIMGLPSSISKLNGLKELDLSSCKKLSSLPDSIYSLSSLQTLNLFACSRLVGFPGINIGSLKALKYLDLSWCENLESLPNSIGSLSSLQTLLLIGCSKLKGFPDINFGSLKALESLDFSGCRNLESLPVSIYNVSSLKTLGITNCPKLEEMLEMKLGVDPCPWPFSPLTCHISNSAIIWDDHWHDCFSSLEALDSQCPLSSLVELSVRKFYDMEEDIPIGSSHLTSLEILSLGNVPTVVEGILYDIFHLSSLVKLSLTKCKPTEEGIPRDIQNLSPLQQLSLHDCNLMKGTILDHICHLTSLEELYLGWNHFSSIPAGISRLSNLKALDLSHCKKLQQIPELPSSLRFLDAHCPDRISSSPLLLPIHSMVNCFKSKIEGRKVINSSLRIGIKMMTCGDLLYAVFMLHLPVNLRMNLSMNQVLYLRMTVTLKMKKQAFIVN* 1055
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 26481481 26486472 + Vvi18g1621 Vvi18g1621 781324

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1621 1054 Gene3D Ribonuclease Inhibitor 603 771 IPR032675 -
Vvi18g1621 1054 Gene3D Ribonuclease Inhibitor 429 602 IPR032675 -
Vvi18g1621 1054 SMART LRR_CC_2 724 751 IPR006553 -
Vvi18g1621 1054 SMART LRR_CC_2 626 653 IPR006553 -
Vvi18g1621 1054 SMART LRR_CC_2 675 702 IPR006553 -
Vvi18g1621 1054 SUPERFAMILY RNI-like 802 973 - -
Vvi18g1621 1054 Gene3D Ribonuclease Inhibitor 785 999 IPR032675 -
Vvi18g1621 1054 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 668 766 IPR044974 GO:0006952
Vvi18g1621 1054 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 549 666 IPR044974 GO:0006952
Vvi18g1621 1054 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 10 584 IPR044974 GO:0006952
Vvi18g1621 1054 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 726 961 IPR044974 GO:0006952
Vvi18g1621 1054 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 579 731 IPR044974 GO:0006952
Vvi18g1621 1054 Gene3D - 88 250 IPR027417 -
Vvi18g1621 1054 Gene3D - 256 340 IPR042197 -
Vvi18g1621 1054 Gene3D - 1 87 IPR035897 -
Vvi18g1621 1054 Pfam NB-ARC domain 110 335 IPR002182 GO:0043531
Vvi18g1621 1054 PRINTS Disease resistance protein signature 120 135 - -
Vvi18g1621 1054 PRINTS Disease resistance protein signature 197 211 - -
Vvi18g1621 1054 PRINTS Disease resistance protein signature 290 304 - -
Vvi18g1621 1054 PRINTS Disease resistance protein signature 934 950 - -
Vvi18g1621 1054 CDD AAA 98 238 - -
Vvi18g1621 1054 SUPERFAMILY L domain-like 393 766 - -
Vvi18g1621 1054 ProSiteProfiles TIR domain profile. 1 87 IPR000157 GO:0007165
Vvi18g1621 1054 SUPERFAMILY Toll/Interleukin receptor TIR domain 1 65 IPR035897 -
Vvi18g1621 1054 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 89 349 IPR027417 -
Vvi18g1621 1054 SMART LRR_typ_2 603 625 IPR003591 -
Vvi18g1621 1054 SMART LRR_typ_2 675 699 IPR003591 -
Vvi18g1621 1054 SMART LRR_typ_2 724 748 IPR003591 -
Vvi18g1621 1054 SMART LRR_typ_2 913 936 IPR003591 -
Vvi18g1621 1054 SMART LRR_typ_2 555 579 IPR003591 -
Vvi18g1621 1054 SMART LRR_typ_2 626 650 IPR003591 -
Vvi18g1621 1054 SMART LRR_typ_2 463 485 IPR003591 -
Vvi18g1621 1054 Pfam TIR domain 1 90 IPR000157 GO:0007165
Vvi18g1621 1054 PANTHER DISEASE RESISTANCE PROTEIN (TIR-NBS-LRR CLASS)-RELATED 549 666 - -
Vvi18g1621 1054 PANTHER DISEASE RESISTANCE PROTEIN (TIR-NBS-LRR CLASS)-RELATED 668 766 - -
Vvi18g1621 1054 PANTHER DISEASE RESISTANCE PROTEIN (TIR-NBS-LRR CLASS)-RELATED 726 961 - -
Vvi18g1621 1054 PANTHER DISEASE RESISTANCE PROTEIN (TIR-NBS-LRR CLASS)-RELATED 10 584 - -
Vvi18g1621 1054 PANTHER DISEASE RESISTANCE PROTEIN (TIR-NBS-LRR CLASS)-RELATED 579 731 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1621 - - - vvi:100241448 1541.94
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1621 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004792 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 24 24