Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1623 ATGAGAAGTCTAAGAAAGCTTAATTTAAGTCATACAAGTATAATGGAATTAACATCATCAATTAGGCATCTAAATGGGCTTGAAGAGTTGGACTTAAGGAACTTCCCTAGCGTGGCAGAAGGAATCCTCGATAAGATTTTCCATCTATCCTCGTTGGTAAAATTATCTCTTACTAAATGCAAGCCAACGGAAGAAGGAATCCCTGGTGATATTTGGAACCTATCTCCACTGCAACAATTATCTCTACGTGACTGCAATCTAATGGAAGGAAAGATCCTCAATCATATTTGCCATCTAACATCCTTGGAAGAATTATATCTGGGTTGGAACCATTTTAGTAGCATACCTGCTGGCATCAGTCGACTTTCTAATCTAAAGGCCCTTGACTTGAGTCATTGCAAGAACCTTCAACAAATTCCAGAGCTTCCATCAAGTCTACGATTTTTAGATGCGCACTGTTCGGATGGTATTTCATCAAGCCCCTCGCTTCTACCTATTCATTCTATGGTCAATTGCTTCAAATCAGAAATTGAGGTATGA 540 39.07 MRSLRKLNLSHTSIMELTSSIRHLNGLEELDLRNFPSVAEGILDKIFHLSSLVKLSLTKCKPTEEGIPGDIWNLSPLQQLSLRDCNLMEGKILNHICHLTSLEELYLGWNHFSSIPAGISRLSNLKALDLSHCKNLQQIPELPSSLRFLDAHCSDGISSSPSLLPIHSMVNCFKSEIEV* 180
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 26502441 26503608 + Vvi18g1623 Vvi18g1623 781326

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1623 179 Gene3D Ribonuclease Inhibitor 1 174 IPR032675 -
Vvi18g1623 179 PANTHER - 67 154 - -
Vvi18g1623 179 PANTHER - 2 61 - -
Vvi18g1623 179 Pfam Leucine Rich Repeat 101 117 IPR001611 GO:0005515
Vvi18g1623 179 Pfam Leucine Rich Repeat 124 141 IPR001611 GO:0005515
Vvi18g1623 179 SMART LRR_typ_2 99 122 IPR003591 -
Vvi18g1623 179 SMART LRR_typ_2 1 24 IPR003591 -
Vvi18g1623 179 PANTHER LEUCINE RICH REPEAT CONTAINING PROTEIN 2 61 - -
Vvi18g1623 179 PANTHER LEUCINE RICH REPEAT CONTAINING PROTEIN 67 154 - -
Vvi18g1623 179 SUPERFAMILY L domain-like 2 162 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1623 - - - vvi:109121440 297.36
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1623 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .