Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1629 ATGGTAGAAAAGTGGAGGACTGCCTTGACGAAAGCAGCCAATATATCTGGATGGCACGTGGAAAACCAGTATGAGTCAGAGGTTATTGGACAAATCATTGAGAAAATCCTTCAAAAATTGGGACCTACACATTTATATGTTGGCAAGAACATTGTTGGAATGGATTATCATTTGGAACAACTCAAAGCATTAATAAATATTGAGTTGAATGATGTTTGTATAATTGGAATTTATGGAATTGGTGGAATTGGCAAGACTACCATTGCCAAAGCAATTTACAATGAAATTTCATGTAAATTTGAGGGTAGTAGCTTTCTTGCAGATGTTCGAGAGCAGTCCAAAGATAATGCTGGTCTGCTTAGATTACAAAATCAACTTCTTGATGATACCTTAGCAGGAACATATAAAAAAAAAAGTAGTAGCATTTATGGAGCAACCCATGAGATAAGGGACAAGCTTCGGTTGAAAAGAGTTCTTGTTATTCTTGATGATGTGGATGGGCGAAGGCAATTAGACTACTTAGCTGGAGAATGTGAATGGTTTGGTTCAGGAAGTAGAATTATCATAACAACTAGGCATAAAGATTTGGTAGCTATAGACGGAGCAAATAAATCATATGAGCCTAGAAAGTTAAATGATGAAGAAGCCATCAAGCTTTTTAGTTTATATGCCTTTAAACAAAATGTTCCAAGAGAAAATTATAAAAATCTTTGTGAGAATGCAGTAAAGTATGCCCAAGGCCTTCCCCTAGCACTTGCAGTTTTGGGTTCTACCTTATCTAGCAAGAGAGGAATACGCGAATGGGAAAGTGAATTGCGTAAATTGGAAAAAGAACCTAACAGGGAAATTTATAATGTACTTAGAACAAGTTTTGATGGATTAAGTCGTGTAGAAGGGGAAATATTCCTTGACATTGCTTGTTTTTTTAAAGGAAAAGATAGAGATTTTGTTTCAAGAATATTGGATGATGCTGAAGGTGAAATAAGTAATCTTTGTGAAAGATGTCTTATAACCATTTTAGACAACAAGATATATATGCATGACTTAATACAACAAATGGGTTGGGAAGTTGTTCGCGAAAAGTGTCAAAACGAGCCCGGGGAACAGAGCAGGTTATGGGATCTTGATGATGTCTCTAGTGTATTAACTAGAAATGCGGGGACAAAGGCAATTGAAGGATTATTCATGGATATGTCTGCACAACAAGAAATTCAATTTACAACTGAAACCTTCACAAAGATGAATAAACTTAGATTGCTCAAAATTCATCAAGATGCTAAATATGATCATATTAAGGAAATTGATGGAGATGTGCATTTTCCTCAAGTGGCCCTTCCTGAAGACTTGAAATTGCCTTCTTTTGAGTTAAGGTATCTCCATTGGGATGGATATTCTTTAAAATACTTGCCACCAAATTTTCATCCGAAGAATCTTGTTGAGCTCAACTTGCGGTGTAGCAACATAAAACAACTTTGGGAAGGAAATAAGGTTCTTAAAAAGTTAAAGGTCATCAATCTTAATCATTCACAACGTCTCATGGAGTTCCCAAGCTTCTCAATGATGCCAAATTTGGAGATACTAACCCTTGAAGGGTGCATAAGCCTTAAGCGTCTTCCAATGGACATTGATAGGTTGCAACACCTTCAGACTCTCTCTTGCCATGATTGTTCAAAACTAGAGTATTTCCCAGAGATCAAGTACACAATGAAAAATCTCAAAAAGCTTGATTTATATGGAACAGCAATAGAGAAGCTACCATCATCATCAATTGAACATTTGGAAGGGCTTGAATATTTGAATTTAGCACATTGCAAAAATCTTGTGATTCTTCCTGAGAACATTTGTAGTTTGAGATTTCTTAAGTTTCTAAATGTCAATGCATGTTCAAAACTCCACAGGTTGATGGAGAGCCTAGAGAGCCTGCAATGCTTAGAGGAGCTTTATTTAGGTTGGCTTAATTGTGAATTGCCTACTTTGTCAGGTTTATCCTCCTTGAGAGTATTACATCTAAATGGCTCTTGTATAACTCCAAGAGTAATCCGCAGCCATGAGTTCTTGTCCTTATTGGAGGAACTCAGTCTCAGTGATTGCGAAGTAATGGAAGGGGCCCTGGATCATATTTTTCATCTATCATCGTTGAAAGAATTAGATCTAAGTAACTGCTATCTAATGAAAGAAGGAATCCCCGATGATATTTATCGTCTATCATCATTGCAAGCATTAGATCTCAGTGGAACTAATATCCATAAAATGCCTGCTAGCATCCACCATCTTTCTAAGCTGAAATTCCTATGGTTGGGTCACTGCAAGCAGCTTCAAGGAAGTCTAAAGCTTCCATCGAGTGTACGATTTTTAGATGGCCATGATAGCTTCAAATCATTGTCATGGCAGAGGTGGCTATGGGGTTTCCTATTCAATTGCTTTAAATCAGAAATTCAGGATGTTGAGTGTAGGGGTGGTTGGCATGACATACAATTTGGTCAATCTGGCTTTTTTGGCAAGGGAATTAGTATTGTAATTCCTAGAATGCCACATTGGATAAGTTATCAGAATGTAGGAAATGAGATAAAAATTGAACTTCCTATGGACTGGTACGAGGACAATGACTTTTTGGGATTTGCTTTATGTGCCGTTTATGTTCCACTTGAGAACACACTTGGGGATGTACCTACAATGTCTTATAGATTAAGTTGTCATTTGAGTTTGTGTGGTGATCAATTTAGGGATTCTCTCTCCTTTTATTCTGTCTGTGAATGCTATTGTAGAGGTGAATCAAGCAATCAAGTGTGGATGACCTGCTATCCTCAGATTGCCATTCAGGAGAAGCATCGCTCCAATAAGTGGAGGCAGTTCGCAGCTTCATTTGTTGGCTATGTCACTGGATCCTTTAAAGTCATAAAGTGTGGGGTCACACTTATATATGAACAGAAGAGTAAGCTTCTTGGATCAGTTGAGAATGTATCTGTTACTTGCTCAGAGTGTCAAACGAATGGGGAGCATGAAGAGAAGCTATGTTTAGGGGAAACTGCTATCAATGAACTACTCAATATTGAGTGCCTCTCCGGAATTCAAAACTTATGTTTGCGGAACTGCAAAAGGCTTGAGAGTCTTCCAAGTGACATTTATAAGTTGAAATCCCTTACAACTTTTTCTTGCTCTGGCTGTTCAAAACTGCAAAGCTTTCCAGAAATTACAGAAGATATGAAAATTTTAAGAGAGCTTCGTTTAGATGGAACTTCTTTAAAAGAACTACCATCATCAATTCAACATCTACAAGGGCTTAAATATTTGGATCTAGAGAATTGCAAAAACCTTCTGAATATTCCAGACAACATTTGTAACTTAAGATCTCTTGAAACTCTCATTGTCTCTGGTTGTTCAAAACTCAACAAACTACCCAAAAACTTGGGGAGCCTTACACAGCTACGGTTGCTTTGTGCTGCACGTTTAGATTCAATGAGTTGTCAATTGCCTTCTTTCTCAGACCTACGCTTCTTAAAAATATTAAATCTAGATCGGTCAAATTTAGTGCATGGAGCAATTCGGAGTGATATTTCCATCTTATACTCATTGGAAGAAGTAGATCTAAGCTACTGCAATCTAGCTGAAGGAGGAATCCCCAGTGAAATTTGCTACCTATCATCACTGCAAGCATTATATCTGAAAGGGAACCATTTTAGTAGCATACCTTCTGGGATCGGTCAGCTTTCTAAGCTGAAAATCCTTGACTTGAGCCACTGTGAGATGCTTCAACAAATTCCAGAGCTTCCATCAAGTTTGCGAGTTTTGGATGCCCATGGATGCATTCGGCTGGAAAGTTTATCTAGTCCACAGAGTCTACTTTTGTCTTCTCTATTCAAATGCTTCAAATCAGAAATTCAGGAGTTGGAATGCAGGATGGTTTTGTCTAGCCTCCTTCTGCAAGGATTTTTCTATCATGGAGTCAATATTGTAATTTCTGAAAGTAGTGGAATCCTGGAGGGGACATGGCATCAGGGATCTCAAGTAACAATGGAGCTTCCCTGGAATTGGTATGAAAATAACAACTTCTTGGGATTTGCTTTATGCTCTGCTTATTCTTCACTTGATAATGAATCCGAGGATGGAGATGGGGATGGATATCCTTGTACTTTCAAATGTTGTTTGACTTTCTGGGCTAGTGAATCTGGATGGCAGTGTGAGCTCCCATTAAAATCCAGATGTACATGCTACAATGATGGTGGTGTATCAGATCAAGTATGGGTGATGTATTATCCCAAGGGTGCTTTTAGAATGAATCCTGTCTCAGTTAAACATGGGTCCTTGAGTGCTTCATTTCATGGTTATATTCATGGTAGAGCAGTCAAGGTGAAAAAATGTGCAGTGCAATTTCTATTCAGCCAAGGATCATCGGTACAAGATGCTCATGTTATCAAGGGATGCAGTGATTACACACAAGGGATCATCGGTACAAGACCATAA 4461 38.09 MVEKWRTALTKAANISGWHVENQYESEVIGQIIEKILQKLGPTHLYVGKNIVGMDYHLEQLKALINIELNDVCIIGIYGIGGIGKTTIAKAIYNEISCKFEGSSFLADVREQSKDNAGLLRLQNQLLDDTLAGTYKKKSSSIYGATHEIRDKLRLKRVLVILDDVDGRRQLDYLAGECEWFGSGSRIIITTRHKDLVAIDGANKSYEPRKLNDEEAIKLFSLYAFKQNVPRENYKNLCENAVKYAQGLPLALAVLGSTLSSKRGIREWESELRKLEKEPNREIYNVLRTSFDGLSRVEGEIFLDIACFFKGKDRDFVSRILDDAEGEISNLCERCLITILDNKIYMHDLIQQMGWEVVREKCQNEPGEQSRLWDLDDVSSVLTRNAGTKAIEGLFMDMSAQQEIQFTTETFTKMNKLRLLKIHQDAKYDHIKEIDGDVHFPQVALPEDLKLPSFELRYLHWDGYSLKYLPPNFHPKNLVELNLRCSNIKQLWEGNKVLKKLKVINLNHSQRLMEFPSFSMMPNLEILTLEGCISLKRLPMDIDRLQHLQTLSCHDCSKLEYFPEIKYTMKNLKKLDLYGTAIEKLPSSSIEHLEGLEYLNLAHCKNLVILPENICSLRFLKFLNVNACSKLHRLMESLESLQCLEELYLGWLNCELPTLSGLSSLRVLHLNGSCITPRVIRSHEFLSLLEELSLSDCEVMEGALDHIFHLSSLKELDLSNCYLMKEGIPDDIYRLSSLQALDLSGTNIHKMPASIHHLSKLKFLWLGHCKQLQGSLKLPSSVRFLDGHDSFKSLSWQRWLWGFLFNCFKSEIQDVECRGGWHDIQFGQSGFFGKGISIVIPRMPHWISYQNVGNEIKIELPMDWYEDNDFLGFALCAVYVPLENTLGDVPTMSYRLSCHLSLCGDQFRDSLSFYSVCECYCRGESSNQVWMTCYPQIAIQEKHRSNKWRQFAASFVGYVTGSFKVIKCGVTLIYEQKSKLLGSVENVSVTCSECQTNGEHEEKLCLGETAINELLNIECLSGIQNLCLRNCKRLESLPSDIYKLKSLTTFSCSGCSKLQSFPEITEDMKILRELRLDGTSLKELPSSIQHLQGLKYLDLENCKNLLNIPDNICNLRSLETLIVSGCSKLNKLPKNLGSLTQLRLLCAARLDSMSCQLPSFSDLRFLKILNLDRSNLVHGAIRSDISILYSLEEVDLSYCNLAEGGIPSEICYLSSLQALYLKGNHFSSIPSGIGQLSKLKILDLSHCEMLQQIPELPSSLRVLDAHGCIRLESLSSPQSLLLSSLFKCFKSEIQELECRMVLSSLLLQGFFYHGVNIVISESSGILEGTWHQGSQVTMELPWNWYENNNFLGFALCSAYSSLDNESEDGDGDGYPCTFKCCLTFWASESGWQCELPLKSRCTCYNDGGVSDQVWVMYYPKGAFRMNPVSVKHGSLSASFHGYIHGRAVKVKKCAVQFLFSQGSSVQDAHVIKGCSDYTQGIIGTRP* 1487
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 26576669 26586440 - Vvi18g1629 Vvi18g1629 781332

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1629 1486 Pfam C-JID domain 1332 1461 IPR045344 -
Vvi18g1629 1486 Pfam C-JID domain 843 977 IPR045344 -
Vvi18g1629 1486 Gene3D Ribonuclease Inhibitor 988 1178 IPR032675 -
Vvi18g1629 1486 Gene3D Ribonuclease Inhibitor 396 562 IPR032675 -
Vvi18g1629 1486 Gene3D Ribonuclease Inhibitor 563 792 IPR032675 -
Vvi18g1629 1486 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 589 978 - -
Vvi18g1629 1486 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 1080 1319 - -
Vvi18g1629 1486 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 48 581 - -
Vvi18g1629 1486 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 48 581 IPR044974 GO:0006952
Vvi18g1629 1486 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 589 978 IPR044974 GO:0006952
Vvi18g1629 1486 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 1080 1319 IPR044974 GO:0006952
Vvi18g1629 1486 Pfam NB-ARC domain 59 281 IPR002182 GO:0043531
Vvi18g1629 1486 Gene3D - 48 203 IPR027417 -
Vvi18g1629 1486 Pfam Leucine Rich Repeat 477 496 IPR011713 -
Vvi18g1629 1486 Gene3D - 210 295 IPR042197 -
Vvi18g1629 1486 PRINTS Disease resistance protein signature 74 89 - -
Vvi18g1629 1486 PRINTS Disease resistance protein signature 152 166 - -
Vvi18g1629 1486 PRINTS Disease resistance protein signature 245 259 - -
Vvi18g1629 1486 PRINTS Disease resistance protein signature 708 724 - -
Vvi18g1629 1486 SUPERFAMILY L domain-like 986 1285 - -
Vvi18g1629 1486 Gene3D Ribonuclease Inhibitor 1187 1297 IPR032675 -
Vvi18g1629 1486 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 44 305 IPR027417 -
Vvi18g1629 1486 Gene3D - 1 47 IPR035897 -
Vvi18g1629 1486 SUPERFAMILY L domain-like 346 776 - -
Vvi18g1629 1486 SMART LRR_typ_2 1115 1139 IPR003591 -
Vvi18g1629 1486 SMART LRR_typ_2 662 687 IPR003591 -
Vvi18g1629 1486 SMART LRR_typ_2 710 735 IPR003591 -
Vvi18g1629 1486 SMART LRR_typ_2 593 617 IPR003591 -
Vvi18g1629 1486 SMART LRR_typ_2 1213 1236 IPR003591 -
Vvi18g1629 1486 SMART LRR_typ_2 569 592 IPR003591 -
Vvi18g1629 1486 SMART LRR_typ_2 1068 1090 IPR003591 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1629 - - - vvi:100255078 2964.48
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1629 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004792 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 24 24