Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1631 ATGGGAAAGCTAAGGGAGTTTAATTTCAGTGGAACATCTATAAACGAGGTACCATTGTCAATTAAACATCTAAACGGTCTTGAAGAGTTGCTTTTAGAAGATTGCAAGAAGCTTGTGGCCTTTTCCGAGAACATTGGTAGTTTGAGCTCTCTTAAATCTCTCAAACTTAAAGGATGTTCAAAATTAAAGGGTCTTCCATCATCAATCAAACATTTAAAAGCTCTTAAAAACTTAGATTTGTCAAGTTGTGAAAATCTTGTGAGGCTTCCTGAGAGTATTTGTAGTTTGAGCTCTCTTGAAACTCTCTTTCTCAATGGGTGTTTAAAATTCAAGGGCTTCCCAGGAGTTAAGGGCCATATGAACAATCTAAGGGTGCTTCGTCTAGATTCAACAGCTATAAAAGAGATACCTTCATCAATTACACATCTAAAAGCCTTGGAATACTTAAATTTGTCAAGGAGCAGCATTGTGAGTCTCCCAGAGAGCATTTGTAGTTTGACATCTCTTAAAACTATAAATGTCGATGAGTGTTCAGCACTCCACAAATTGCCAGAGGACCTAGGGGAGTTGTCACGTTTGGAGATACTTTCATTTTCATACATCAGATGTGACTTGCCCTTGATTAAGAGAGATAGCCGCTTGTCCTCATTGAAGACATTAATCCTAATTGATTGCAACTTAAAGGACGGAGTAGTCCTTGATATTTGCCACCTTTTGTCATTGAAAGAGCTACATCTAAGCAGCTGCAACATAAGAGGAATCCCTAATGATATTTTCTGCCTATCATCCTTGGAAATATTGAATCTGGATGGAAACCATTTTAGTAGCATACCTGCTGGCATCAGTCGACTGTATCATCTGACATCACTTAACTTGAGGCACTGCAACAAGCTTCAACAAGTTCCAGAGCTTCCATCAAGTCTACGGCTTTTAGATGTGCATGGCCCTTCAGATGGTACTTCATCAAGCCCAATCAGGCGTAATTGGAATGGAGCATATTTTTCTGATTCTTGGTACAGTGGCAACGGAATTTGTATTGTGATTCCTGGAAGTAGTGGAATACCAAAGTGGATAAAGAACAAGAGAAAGGGATCTGAGATAGAGATAGGGCTTCCTCAGAATTGGCACCTAAACAATGATTTCTTGGGATTTGCCTTATACTGTGTTTATGCTCCCGTTCCCTCTAACCTTGAGGCCATGATTAGAACAGGATTTCTGAATATATCTGAGAAAAGATCCATTTTTGGATCTCTCTTTGGTTTTTATTTAGAAGTAAACTGTGGCATGGCTAGCCATGGCGATGAATTCCAATCCAAGGATATTCTCTCATTTTCATCTGATTGTGAATGCTGCCAGGATTTTGATTTTGATGGTGGTCTATCATGGGTAATATGTTATCCCAAAGTTGCTATTCGGGAGAAGTATGGGACGCACTTCAAGGCTTTATTTCAGGGCTGCTATTTTGGTAAATTGAAAAGCTTTGAGGTGATAGAATGTGGGGTCCATCTTATATACGCCTAA 1521 39.25 MGKLREFNFSGTSINEVPLSIKHLNGLEELLLEDCKKLVAFSENIGSLSSLKSLKLKGCSKLKGLPSSIKHLKALKNLDLSSCENLVRLPESICSLSSLETLFLNGCLKFKGFPGVKGHMNNLRVLRLDSTAIKEIPSSITHLKALEYLNLSRSSIVSLPESICSLTSLKTINVDECSALHKLPEDLGELSRLEILSFSYIRCDLPLIKRDSRLSSLKTLILIDCNLKDGVVLDICHLLSLKELHLSSCNIRGIPNDIFCLSSLEILNLDGNHFSSIPAGISRLYHLTSLNLRHCNKLQQVPELPSSLRLLDVHGPSDGTSSSPIRRNWNGAYFSDSWYSGNGICIVIPGSSGIPKWIKNKRKGSEIEIGLPQNWHLNNDFLGFALYCVYAPVPSNLEAMIRTGFLNISEKRSIFGSLFGFYLEVNCGMASHGDEFQSKDILSFSSDCECCQDFDFDGGLSWVICYPKVAIREKYGTHFKALFQGCYFGKLKSFEVIECGVHLIYA* 507
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 26685497 26687218 + Vvi18g1631 Vvi18g1631 781334

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1631 506 Gene3D Ribonuclease Inhibitor 114 205 IPR032675 -
Vvi18g1631 506 Pfam Leucine rich repeat 240 296 IPR001611 GO:0005515
Vvi18g1631 506 Pfam Leucine rich repeat 122 176 IPR001611 GO:0005515
Vvi18g1631 506 ProSiteProfiles Leucine-rich repeat profile. 240 261 IPR001611 GO:0005515
Vvi18g1631 506 ProSiteProfiles Leucine-rich repeat profile. 263 285 IPR001611 GO:0005515
Vvi18g1631 506 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 57 121 313 - -
Vvi18g1631 506 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 57 2 202 - -
Vvi18g1631 506 Gene3D Ribonuclease Inhibitor 206 326 IPR032675 -
Vvi18g1631 506 Gene3D Ribonuclease Inhibitor 1 113 IPR032675 -
Vvi18g1631 506 Pfam C-JID domain 352 506 IPR045344 -
Vvi18g1631 506 SUPERFAMILY L domain-like 3 306 - -
Vvi18g1631 506 SMART LRR_typ_2 120 142 IPR003591 -
Vvi18g1631 506 SMART LRR_typ_2 72 96 IPR003591 -
Vvi18g1631 506 SMART LRR_typ_2 238 260 IPR003591 -
Vvi18g1631 506 SMART LRR_typ_2 143 166 IPR003591 -
Vvi18g1631 506 SMART LRR_typ_2 261 284 IPR003591 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1631 - - - vvi:100256747 959.133
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1631 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004792 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 24 24