Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1637 ATGCATAGTACCAGAATGGGTGGAAGTTCGATAGATGATGAATGGGAGTTTACTGCTCCTTCCAGTGGGGTTCGGACTCTGGTTTTGGTTGGACGGACAGGCAATGGTAAAAGTGCAACAGGCAATAGCATTCTCGGAAGAAAGTCCTTTAAATCAAGGGCCAGCTCTTCTGGCGTTACAAGCACTTGTGAATTACAAAGAACTATATTGAGAGATGGCCAAATTGTTAATGTCATTGACACTCCTGGATTGTTTGATTTGTCTGCTGAATCTGACTTTGTTGGCAAAGAAATTGTCAAATGCATTGACTTGGCAAAGGATGGGGTCCATGCAGTGCTTGTAGTTTTTTCAGTTAGGACTCGCTTTTCTAAGGAAGAAGAAGCTGCACTTCATAGCTTGCAGACTTTGTTTGGAAGCAAAATTATTGACTACATGATTGTAGTTTTTACTGGTGGGGATGAACTTGAAGATAACGATGAGACACTGGAAGATTATTTGGGCCGTGAGTGCCCTGAGCCTTTGAAGCAAACTCTCCTCCTTTGTCAAAATCGACTAGTACTTTTTGACAACAAGACCAAGGATGAAGCCAAGAAGTATGAACAAGTTCAGAAACTTCTGTCCCTTGTAAATTCAGTCATATTGCAGAATGGTGGACAGCCATATACAGATGAGTTGTTCATGGAATTGAAGAAAGGAGCTCAGAAACTGCGTGACCAAACTGAAGAGGTGGATTCATTGGAGGGGTACTCTAAGCGAGAGATATTAGTGCTGAAGGAGCAGATGCATAAATCATATGAAGAACAACTGAAGCGAATAACCGAGATGGTTGAGGTGAAGCTGAGAGAGACAACTATGAAGCTGGAAAGACAATTGGCAGAAGAGCAAGCGGCACGGCTGAAGGCAGAAGAGATAGCACAGAGAGCACAGTTGGCATCAAATGATGAGATTCGGAAGCTGAGGGAGAATTTAGAGAGAGCACAGAGGGAGACGGAGGAGCTCCGGAAGCGAGCTGAAAGTGGCAAGTGTGCCATTTTATGA 1038 43.64 MHSTRMGGSSIDDEWEFTAPSSGVRTLVLVGRTGNGKSATGNSILGRKSFKSRASSSGVTSTCELQRTILRDGQIVNVIDTPGLFDLSAESDFVGKEIVKCIDLAKDGVHAVLVVFSVRTRFSKEEEAALHSLQTLFGSKIIDYMIVVFTGGDELEDNDETLEDYLGRECPEPLKQTLLLCQNRLVLFDNKTKDEAKKYEQVQKLLSLVNSVILQNGGQPYTDELFMELKKGAQKLRDQTEEVDSLEGYSKREILVLKEQMHKSYEEQLKRITEMVEVKLRETTMKLERQLAEEQAARLKAEEIAQRAQLASNDEIRKLRENLERAQRETEELRKRAESGKCAIL* 346
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 26843050 26848844 + Vvi18g1637 Vvi18g1637 781340

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1637 345 Coils Coil 309 343 - -
Vvi18g1637 345 Pfam AIG1 family 25 239 IPR006703 GO:0005525
Vvi18g1637 345 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 21 226 IPR027417 -
Vvi18g1637 345 PANTHER GTPASE, IMAP FAMILY MEMBER-RELATED 4 343 IPR045058 -
Vvi18g1637 345 Coils Coil 262 302 - -
Vvi18g1637 345 ProSiteProfiles AIG1-type G domain profile. 22 230 IPR006703 GO:0005525
Vvi18g1637 345 PANTHER BNAC06G07830D PROTEIN 4 343 - -
Vvi18g1637 345 CDD AIG1 25 231 - -
Vvi18g1637 345 Gene3D - 25 241 IPR027417 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1637 - - - vvi:100246517 644.425
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1637 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone4ag1183 Cone7ag0947 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000694 1 6 1 4 1 4 1 3 4 4 3 4 1 4 4 1 5 2 1 4 5 2 3 4 3 4 2 6 4 1 92