Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1638 ATGAAGTATTGTAACTCGAGATTAAACACTTGTTTTCAAGGGAAAACAAGTATTTATATTAGGTTAAGCCATAAAATTGAAGGCATTCAAGGCTCATCTTTCCGGCCCAAATGGGCTTGGAAAGAAAACACGCTCACATTCGTCCTTCCATGGAAAGAAAAACTCATAGCTAGCTCTGTAGTTACTAGTTTGCACTCCTCTCCGCGGTCGCCGACATCGCCACCGCTGACGACGTCGTCTGCGCCACCGTCAAATCCTTACCTATACTACGTCTTAGAGTTGTTCTCTGTAGACCTCATTTCACTGATGGCGATTGTGAAAGACTCTGTTGCCTATTCGAATATCTCTCCACCAAATTCACATGGAGCTGTTGTTCTTGGCGGAACTTTTGATAGATTGCATGATGGCCACCGGCTTTTTCTCAAGGCATCGGCTGAGGTTGCAAGGGATCGCATTGTCATTGGGGTTAGTGATGGACCCATGTTGAGTAAAAAACAGTTTGCTGATCTAATAGCACCGATTGAGAAAAGGATGCATGATGTTAAAGAGTATATTAAGTCTATCAAACCAGAGCTAGTAGTGCAAGTTGAACCAATTATTGACCCCTATGGTCCTTCAATCGTTGATGAGAATTTGGAGGCTATTGTTGTCAGCAAGGAGACTTTACCTGGGGGACTATCAGTAAATAAGAAGAGAGCTGAGAGAGGCCTCTCGCAACTAAAGATTGAAGTTATTGACATCCTCCCTGAGGAATCAACTGGAGAAAAGCTGAGTTCTACAACATTGAGGAGACTTGAGGCTGAGAACATGTCCTGCAGATTTGGAAGAGATGTTATGAAACTAATATCCTATCTTAGACTGTTAGTTTTGATGGATGCACTTTCTGATTTCTCTACTGTTCCCTTTTATACAAGAAGAAATCTTTATGTTTTGGATATTGCTTATGTTTCTGGAGAAGCTTTTATTCGATTACTATCTAAGTGGATTGTATACTTATCATGCAATCAAAGGGTAACATTCTGTAGGTACAGCATCTCTCATCCTTCAGATGCTCGCGTTAATATGAGAGTCCAGACAACTAGTAATTCAGCCAGAGAAGTGTTGAAACATGCTTGCTAG 1119 41.38 MKYCNSRLNTCFQGKTSIYIRLSHKIEGIQGSSFRPKWAWKENTLTFVLPWKEKLIASSVVTSLHSSPRSPTSPPLTTSSAPPSNPYLYYVLELFSVDLISLMAIVKDSVAYSNISPPNSHGAVVLGGTFDRLHDGHRLFLKASAEVARDRIVIGVSDGPMLSKKQFADLIAPIEKRMHDVKEYIKSIKPELVVQVEPIIDPYGPSIVDENLEAIVVSKETLPGGLSVNKKRAERGLSQLKIEVIDILPEESTGEKLSSTTLRRLEAENMSCRFGRDVMKLISYLRLLVLMDALSDFSTVPFYTRRNLYVLDIAYVSGEAFIRLLSKWIVYLSCNQRVTFCRYSISHPSDARVNMRVQTTSNSAREVLKHAC* 373
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 26856806 26884582 + Vvi18g1638 Vvi18g1638 781341

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1638 372 Gene3D HUPs 123 272 IPR014729 -
Vvi18g1638 372 PANTHER PHOSPHOPANTETHEINE ADENYLYLTRANSFERASE 104 271 - -
Vvi18g1638 372 Pfam Cytidylyltransferase-like 126 264 IPR004821 GO:0003824|GO:0009058
Vvi18g1638 372 Pfam RNA polymerase Rpb3/Rpb11 dimerisation domain 332 372 IPR009025 GO:0006351|GO:0046983
Vvi18g1638 372 Gene3D - 321 372 IPR036603 GO:0006351|GO:0046983
Vvi18g1638 372 PANTHER DEPHOSPHO-COA KINASE-RELATED 104 271 - -
Vvi18g1638 372 CDD PPAT_CoAS 124 264 - -
Vvi18g1638 372 SUPERFAMILY Nucleotidylyl transferase 124 272 - -
Vvi18g1638 372 SUPERFAMILY RBP11-like subunits of RNA polymerase 331 372 IPR036603 GO:0006351|GO:0046983
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1638 K02201 E2.7.7.3B; pantetheine-phosphate adenylyltransferase [EC:2.7.7.3] K02318 vvi:100248299 325.865
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1638 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .