Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1639 ATGGGGAGAGGAAAGATCGAGATCAAGAGGATCGAAAACACGACCAACCGTCAGGTCACATTCTGCAAGCGAAGGAATGGGCTTTTGAAGAAGGCTTATGAATTATCAGTGCTATGTGATGCAGAAGTTGCCCTCATCGTCTTCTCCAGCCGCGGTCGAGTCTATGAGTACTCAAACAACAACATAAAATCAACCATAGATAGGTACAAGAAGGCCAGCTCAGATAGTACAAATGGAGGCTCTACCATGGAGATCAATGCCCAATACTACCAGCAAGAATCAGCAAAGCTGCGCCAGCAAATACAGATGCTGCAGAATTCTAACAGGCACTTAATGGGTGATTCCTTGGCTTCCTTGACTGTGAAGGAGCTAAAGCAGCTCGAGAACAGGCTTGAACGAGGCATCACAAGAATCAGGTCGAAGAAGCATGAGTTGCTGTTGGCTGAGATTGAGTACTTGCAGAAAAGGGAAATTGAGCTGGAAAATGAAAGCGTATATCTCCGAACCAAGATTGCAGAAGTGGAGAGGCTTCAGCAAGCAAACATGGTATCAACACATGAGTTCAATGCCATCCAGGCATTAGTTTCTCGCAATTTCTTTCAGCCCAATATGATTGAGGGTGGATCCACAGGCTACCCACTTCCTGATAAGAAGGTCCTCCATCTCGGCTTAATGAGACATTTCAAGCCATGCATTGGGTAG 702 45.87 MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRVYEYSNNNIKSTIDRYKKASSDSTNGGSTMEINAQYYQQESAKLRQQIQMLQNSNRHLMGDSLASLTVKELKQLENRLERGITRIRSKKHELLLAEIEYLQKREIELENESVYLRTKIAEVERLQQANMVSTHEFNAIQALVSRNFFQPNMIEGGSTGYPLPDKKVLHLGLMRHFKPCIG* 234
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 26888676 26896544 - Vvi18g1639 Vvi18g1639 781342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1639 233 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Vvi18g1639 233 PANTHER SERUM RESPONSE FACTOR HOMOLOG 2 213 - -
Vvi18g1639 233 Pfam K-box region 84 171 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vvi18g1639 233 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL11 2 213 - -
Vvi18g1639 233 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Vvi18g1639 233 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Vvi18g1639 233 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Vvi18g1639 233 Gene3D - 13 95 IPR036879 GO:0003677|GO:0046983
Vvi18g1639 233 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977|GO:0045944
Vvi18g1639 233 SUPERFAMILY SRF-like 2 74 IPR036879 GO:0003677|GO:0046983
Vvi18g1639 233 Coils Coil 87 107 - -
Vvi18g1639 233 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Vvi18g1639 233 ProSiteProfiles K-box domain profile. 87 177 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vvi18g1639 233 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Vvi18g1639 233 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Vvi18g1639 233 Coils Coil 124 163 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi3g838 Vvi18g1639 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14297 PF01486 K-box 3.00E-27 No_clan Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1639 K09264 - vvi:100232870 429.098