Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g164 ATGGCGTTGGTCAAGTCAAAGGTGCGTTTGTCTCTTTTACGATATAGTCTCTCTCCTGTTTCTCAGCATAGCTTTAGACTCTATTCTTCTTCTTCGGAAGCCTCCGAAGAAGAAGATGAAGTAAAGGAGAGTGGTAACAGTGCTGTTAATATCGTATTATCTTCTGAAGAAACCCTAGTTGTGGAAAAGTTTCATTCTCTGATCAAAAGCCACCAACGAAAAAACACTAACCCTGATCCTATCTCTCCAAATCCTCACTATACTATTGCTAGTCTGAGTTTCGATTTTTCCCAAATCTCCTCCGCGGATTCTGTCTCCTCCGCCATCGTCCGCCGCGTGATTGAGAAATGTGGTGGTGTCCGCCACGGCATTCCCTTTCCCCAAACACTAGCGTTCTTCAACTGGGCGACGAACCTTGAAGAGTTTGGGCACTCTCCCGAACCCTACATGGAGATGATTGATCTAGCCGGGAAGGCTGGATTGGCTGCAGAAGCGGTCCATGCGTTTAATCGTATGGAGGACTATGGCTGCAAACCTGATAAGATTGCATTTTCTGTTGTGATTAGTAGTCTATCTAAGAAGAGAAGGGCAATTGAGGCTCAGTCCTTTTTTGATAGTTTGAAGGATAGATTCGAGCCTGATGTGGTTGTGTACACTAGCTTGGTTCATGGGTGGTGCCGAGCAGGCAACATTTCAGAAGCAGAGAGGGTTTTTGGGGAAATGAAGATGGCTGGAATTCAGCCCAATGTGTATACTTACAGTATTGTGATTGATGCATTGTGTAGAAGTGGACAAATTACGCGTGCCCATGATGTTTTTTCAGAGATGATTGATGTAGGGTGTGATCCAAATGCTATCACTTTCAACAACCTAATGCGGGTTCATGTCAAGGCAGGTCGAACGGAGAAGGTTTTACAAGTTTATAATCAGATGAAGAGGCTTGGATGCCCTCCTGATGCCATCACATACAATTTTCTCATCGAGAGTCATTGCAGAGATGACAATCTTGAAGAAGCTGTTAAGATTCTTAATTCAGTTAAGAAAGGGTGTAACCTAAATGCATCATCTTTCAATCCGATCTTTGGATGCATTTCAAAGTTGGGGGATGTCAATAGTGCCCACCGCATGTTTGCTAAGATGAAGGATTTGAAATGTAGACCCAATACAGTGACATACAATATATTGATGCGGATGTTTGCTGACAAAAAATCAACCGACATGGTTCTCAAGCTCAGGAAAGAAATGGATGAAAATGAAATTGAGCCTAATGCGAATACTTACCGGGTCCTAATTTCAACTTTCTGTGGAATTGGGCATTGGAACAATGCATACTCGTTCTTTAAGGAGATGATTGAGGAGAAATGCTTGAGACCAAGTCTGCCAGTTTATGAGATGGTGCTTCAGCAGCTGAGGAAGGCAGGGCAGCTAAAGAAGCATGAGGAATTGGTGGAGAAGATGGTGAATAGGGGATTTGTTACTCGGCCTCTATAG 1491 43.46 MALVKSKVRLSLLRYSLSPVSQHSFRLYSSSSEASEEEDEVKESGNSAVNIVLSSEETLVVEKFHSLIKSHQRKNTNPDPISPNPHYTIASLSFDFSQISSADSVSSAIVRRVIEKCGGVRHGIPFPQTLAFFNWATNLEEFGHSPEPYMEMIDLAGKAGLAAEAVHAFNRMEDYGCKPDKIAFSVVISSLSKKRRAIEAQSFFDSLKDRFEPDVVVYTSLVHGWCRAGNISEAERVFGEMKMAGIQPNVYTYSIVIDALCRSGQITRAHDVFSEMIDVGCDPNAITFNNLMRVHVKAGRTEKVLQVYNQMKRLGCPPDAITYNFLIESHCRDDNLEEAVKILNSVKKGCNLNASSFNPIFGCISKLGDVNSAHRMFAKMKDLKCRPNTVTYNILMRMFADKKSTDMVLKLRKEMDENEIEPNANTYRVLISTFCGIGHWNNAYSFFKEMIEEKCLRPSLPVYEMVLQQLRKAGQLKKHEELVEKMVNRGFVTRPL* 497
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 1619216 1620812 - Vvi18g164 Vvi18g164 779867

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g164 496 Pfam PPR repeat 152 177 IPR002885 -
Vvi18g164 496 Pfam PPR repeat 356 385 IPR002885 -
Vvi18g164 496 Pfam PPR repeat 183 209 IPR002885 -
Vvi18g164 496 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 284 318 IPR002885 -
Vvi18g164 496 SUPERFAMILY TPR-like 259 449 IPR011990 GO:0005515
Vvi18g164 496 Gene3D Tetratricopeptide repeat domain 347 494 IPR011990 GO:0005515
Vvi18g164 496 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 249 283 IPR002885 -
Vvi18g164 496 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 388 422 IPR002885 -
Vvi18g164 496 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 423 457 IPR002885 -
Vvi18g164 496 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 353 387 IPR002885 -
Vvi18g164 496 PANTHER CHLOROPLAST RNA PROCESSING 1-LIKE PROTEIN 12 158 - -
Vvi18g164 496 PANTHER CHLOROPLAST RNA PROCESSING 1-LIKE PROTEIN 158 495 - -
Vvi18g164 496 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 145 179 IPR002885 -
Vvi18g164 496 Gene3D Tetratricopeptide repeat domain 124 278 IPR011990 GO:0005515
Vvi18g164 496 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 158 495 - -
Vvi18g164 496 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 12 158 - -
Vvi18g164 496 Pfam PPR repeat family 387 435 IPR002885 -
Vvi18g164 496 Pfam PPR repeat family 213 262 IPR002885 -
Vvi18g164 496 Pfam PPR repeat family 283 332 IPR002885 -
Vvi18g164 496 TIGRFAM PPR: pentatricopeptide repeat domain 390 424 IPR002885 -
Vvi18g164 496 TIGRFAM PPR: pentatricopeptide repeat domain 152 180 IPR002885 -
Vvi18g164 496 TIGRFAM PPR: pentatricopeptide repeat domain 321 347 IPR002885 -
Vvi18g164 496 TIGRFAM PPR: pentatricopeptide repeat domain 251 285 IPR002885 -
Vvi18g164 496 TIGRFAM PPR: pentatricopeptide repeat domain 356 389 IPR002885 -
Vvi18g164 496 TIGRFAM PPR: pentatricopeptide repeat domain 286 320 IPR002885 -
Vvi18g164 496 TIGRFAM PPR: pentatricopeptide repeat domain 216 250 IPR002885 -
Vvi18g164 496 TIGRFAM PPR: pentatricopeptide repeat domain 426 456 IPR002885 -
Vvi18g164 496 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 319 349 IPR002885 -
Vvi18g164 496 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 214 248 IPR002885 -
Vvi18g164 496 Gene3D Tetratricopeptide repeat domain 279 346 IPR011990 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g164 - - - vvi:100267650 948.347
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g164 . Blo12g00873 . Bda03g00299 . Bpe04g00260 Bma04g00261 . . . . . Car01g01561 . . . . . . . . . . . . . . . . . . . Cone7ag1913 . . Lsi04g01777 . Chy04g00393 . . . . . . Bpe14g00404 . . . . . . . . . . . . . . . . . . Cla05g01599 Cam05g1710 Cec05g1710 Cco05g1767 Clacu05g1697 Cmu05g1586 Cre05g1705 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012790 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 0 1 1 1 1 1 1 1 0 1 1 1 28