Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g165 ATGGCTTGGCGGCCACAGGAGGAAGGTCTCGGAGAGATATGCGGTTTGCTGGAACAACACATTTCTCCTACTTCGGATAAGTCTGTGATTTGGAAACAGCTTCAACATTATAAACAATTCTCTGATTTCAATAACTATCTCGCCTTCATCTTTGCCCATGCGGAGGGCAAATCAGTTGAAATTCGTCAGGCAGCTGGTCTACTGCTGAAAAATAATCTCAGAAGTTCTTTCAGAACTTTAGATCCTGCACATCAACAGTATATAAAATCAGAATTGTTGCCTTGTTTAGGAGCGGCAGATAAGCACATAAGATCTACAGTTGGGACAATTATTACTGTTATTGTCCAACAAGGAAGAATTTTTGGTTGGCCGGAATTGTTGCAAGCCCTTGTGCATTGCTTGGATAGTAATGACCTCAACCTTATGGAAGGTGCTCTGGCTGCTTTATTAAAGATTTGTGAAGACATTCCACAAGAGCTTGATTCAGAAATACCTGGATTAACTGAACGCCCCATCGATGCTTTCTTGCCCAGATTGTTCCAGCTATTCAAGTCACCTCATGTCTCTATACGGAAGCTTTCACTGGGATCAATAAATCAGTTCATTATTCTGATGCCCACTGCTTTATTCATGTCCATGGATCAATGCCTCCAAGGTTTGTTTGTTCTTGCTCATGACCCTATTGCAGAGATTCGAAAATTGGTTTGTGCTGCTTTTGTCCAGCTGGTTGAAGTTCAGCCTGCTGTCCTGGAGCCACATATGAGGAATATAATTGAATACATGTTGCAAGCCAACCGGGACGCTGATGATGAAGTTGCTCTTGAGTCTTGTGAATTTTGGTCAACCTACTGTGAAGCGCAGTTAGATCCTGAACTTTTAAGAGAATTCTTACCACATCTGATTCCAGTTCTGTTGTCAAATATGGCTTATGCTGAGGATGATGAGTCACTTGCTGATGCAGAGGAGGACGAGTCTATCCCGGATAGAGATCAGGATCTGAAGCCTCGCTTCCATTCATCACGATCACATGGACTAGATGATATGAAGGACGATGATGATGAAGCTGTCAATATTTGGAACTTGAGAAAATGCAGTGCAGCAGGTCTTGATATCCTTTCAGATGTGTTTGGGGATGAGATTCTTCCAACATTGATGCCTTTAGTTCAGGCTAAGCTATCCACCTCAGATGCTAGGTCCTGGAAGGAAAGGGAAGCTGCAGTTTTAGCCCTTGGTGCCATAGCTGAGGGTTGCGTTAGAGGTCTTTTCCCTCATTTGGCAGAGATTGTGGCTTTTCTCATCCCCCTTTTAGACGATAAATTTCCTTTGATACGAAGTATTACTTGCTGGACCCTTTCTCGGTTTAGCAAATTCATTGTTCAGGGTGTTGGTCATCAAAAAGGCTATGATCAGTTCAACCGGGTCCTCGTGGGTCTTCTACAAAGAGTCTTAGACACTAACAAGAGGGTACAAGAAGCTGCATGTTCAGCTTTTGCTACTCTTGAAGAGGAGGCTGCAGAAGAGTTGACACCACATGTAGCAATCATTTTACAACACCTTTTATGTGCTTTTGGGAGATATCAGAAAAGGAACCTCCGAATTTTATATGATGCTATAGGCACTTTAGCAGATGCTGTTGGAGGAGAACTGAATCAGTCCAGATACCTTGATATTCTGATGCCTCCATTAATTGCAAAGTGGCAGCTAGTTTCCAATTCAGACAAAGACCTCTTTCCACTGCTAGAGTGCTTTACATCTATAGCACAGGCATTAGGTACTGGGTTTTCGCAATTTGCTGAACCAGTATTCCAGAGGTGCATAAGCATCATCCAATCTCAACTGCTAGCAAAGGCCTCGGTTGATCCTCTGTCAGCTGCTGTTCAATATGATAAAGAATTCATTGTTTGCTCTTTGGACTTGCTCTCAGGGCTTGCAGAAGGTCTTGGTAGTGGAATTGAGAGCTTGGCTGCACAAAGCAATTTAAGGGACCTACTTCTGCAATGCTGTATGGATGATGCTTCTGATGTTTGTCAAAGTGCTCTTGCCCTTCTTGGGGACCTTGCAAGAGCCTGTCCAGTTTATTTGCATCCGCGTCTCTCTGAATTCCTCAATGTTGCAGCCAGACGATTGAATCCTCCTGAGGTAAAGGAAACTTTTTCAGTGGCAAACAATGCATGTTGGGCGATTGGAGAACTAGCAGTGAAGGCTCACAAAGAAGTTTCCCCAATTGTGATGACAGTTGTCTCGTGCCTAGCTCCAATCCTTCAACAGGCAGAGGGTTTTAATAAGTCACTTGTGGAAAATAGTGCCATCACCCTTGGGAGGCTTGCTTGGGTCTGCCCAGAGATTGTAGCACTGCATATGGAGCATTTTATGCAGTCATGGTGTACTGCTTTATCCACGATACGTGATGATATTGAGAAGGAAGATGCCTTCCGTGGTCTATGTGCAACTGTTAGAGCAAATCCATCTGGGGCTTTGAGTTCACTTGTGCACATGTGCAAAGCTATTGCAAGTTGGCATCATATAAGGAGTGAGGATCTGCACAATGACATCTGCCAAGTTTTGAAAGGATTTAAGCAGATGCTTAACAATGGAGCATGGGAACAGTGCATGTCTGCATTGGAGCCCCCAGAGAAGGAGAAACTGTTGAACTACCTAATATAA 2664 43.62 MAWRPQEEGLGEICGLLEQHISPTSDKSVIWKQLQHYKQFSDFNNYLAFIFAHAEGKSVEIRQAAGLLLKNNLRSSFRTLDPAHQQYIKSELLPCLGAADKHIRSTVGTIITVIVQQGRIFGWPELLQALVHCLDSNDLNLMEGALAALLKICEDIPQELDSEIPGLTERPIDAFLPRLFQLFKSPHVSIRKLSLGSINQFIILMPTALFMSMDQCLQGLFVLAHDPIAEIRKLVCAAFVQLVEVQPAVLEPHMRNIIEYMLQANRDADDEVALESCEFWSTYCEAQLDPELLREFLPHLIPVLLSNMAYAEDDESLADAEEDESIPDRDQDLKPRFHSSRSHGLDDMKDDDDEAVNIWNLRKCSAAGLDILSDVFGDEILPTLMPLVQAKLSTSDARSWKEREAAVLALGAIAEGCVRGLFPHLAEIVAFLIPLLDDKFPLIRSITCWTLSRFSKFIVQGVGHQKGYDQFNRVLVGLLQRVLDTNKRVQEAACSAFATLEEEAAEELTPHVAIILQHLLCAFGRYQKRNLRILYDAIGTLADAVGGELNQSRYLDILMPPLIAKWQLVSNSDKDLFPLLECFTSIAQALGTGFSQFAEPVFQRCISIIQSQLLAKASVDPLSAAVQYDKEFIVCSLDLLSGLAEGLGSGIESLAAQSNLRDLLLQCCMDDASDVCQSALALLGDLARACPVYLHPRLSEFLNVAARRLNPPEVKETFSVANNACWAIGELAVKAHKEVSPIVMTVVSCLAPILQQAEGFNKSLVENSAITLGRLAWVCPEIVALHMEHFMQSWCTALSTIRDDIEKEDAFRGLCATVRANPSGALSSLVHMCKAIASWHHIRSEDLHNDICQVLKGFKQMLNNGAWEQCMSALEPPEKEKLLNYLI* 888
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 1623645 1667296 - Vvi18g165 Vvi18g165 779868

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g165 887 SMART IBN_N_2 30 98 IPR001494 GO:0006886|GO:0031267
Vvi18g165 887 PANTHER TRANSPORTIN 1 ISOFORM 1 4 885 - -
Vvi18g165 887 MobiDBLite consensus disorder prediction 327 348 - -
Vvi18g165 887 Pfam HEAT-like repeat 400 453 - -
Vvi18g165 887 Gene3D - 1 886 IPR011989 -
Vvi18g165 887 PANTHER IMPORTIN BETA 4 885 IPR040122 GO:0006606
Vvi18g165 887 Pfam Importin-beta N-terminal domain 31 97 IPR001494 GO:0006886|GO:0031267
Vvi18g165 887 ProSiteProfiles Importin-beta N-terminal domain profile. 30 98 IPR001494 GO:0006886|GO:0031267
Vvi18g165 887 MobiDBLite consensus disorder prediction 316 348 - -
Vvi18g165 887 SUPERFAMILY ARM repeat 1 880 IPR016024 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g165 K18752 TNPO1, IPO2, KPNB2; transportin-1 - vvi:100245339 1726.45
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi3g205 Vvi18g165 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g165 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005972 1 2 3 0 2 1 1 1 1 1 1 1 2 1 1 2 1 2 2 1 2 1 1 0 1 1 1 2 1 2 39