Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1657 ATGAAAATGATTTTTTTGATTATTTTTTCATCCATATTTTTTGGAATGAATTTTCATTTGAAAGAATTGAAATCATTGATAAAAATTGAGTCAAATGATGTTCGCATGATTGGGATTTATGGGCTTGGTGGAATTGGTAAGACCACAATCGCCAAAGTTGTTTATAATAATATCTCACATCAATTTGAGAGTAGAATCTTCCTTGAAAATGTTAGAGAAAGATCTAAGGACCACTCAAGTTTACTTCAATTACAGAAAGAACTTCTTAATGGTGTCGCGAAGGGAAAATATCTAAAAATAAGTAATATTCACGAGGGGGTTAATGTGATAAGAAACAGATTTCTCTCAAAAAGGGTTCTTCTTATTCTTGATGATGTAGACAAATCGGAGCAATTACAATTCTTAGTTGGAGAGCATGGTTGGTTTGGTCCTAGAAGTAGAATCATCATAACATCTAGAGATCAACATTTGCTGGAAGAGTATGAAATGGATGCATCATATGAAGTTAAGGTGTTGGATTATGAGGAATCGATGCAACTTTTTTGTCTACATGCCTTTAAACAAAACATTCTTAGAAAAGATTATGTAGACCTCTCAAATGATGTGGTAAATTATGTTAATGGCCTGCCCTTAGCTCTTGAAATTTTGGGTTCTTTCCTTTTCAATAAAAGCAAGCTTGAGTGGGAAAGTACATTACAAAAACTAAAAAGAAAACCTAACATGAATGTCCAAAATGTGCTTAAGATAAGTTTTGATGGATTAGATGAGATAGAGAAAGAGATATTTCTTGATGTGGCATGCTTCTTCAAAGGATGGAATGAAACTGATGTTACAAGGCTGCTTGACCATGCAAATATTGTAATAAGAGTTCTTAGTGACAAGTGTCTAATAACACTTTCACATAATATCATATGGATGCATGATTTGGTACAAGAAATGGGTAGAGAAATTGTTCGACAGAATCATCCTAAAGAGCCTGGGAAATGGAGTAGATTGTGGGACCCTGAAGACATTTGCCTTGTATTGAGAAGAAAAATGGGGACGGAAGCAATTGAAGGGATATTTCTAGACATGTCTAGATCAAGAGAGATCTCATTTACTACTGAAGCTTTCAGAAGGATGGAGAGACTTAGATTATTCAAAGTTTATTGGAGTCATGGTTTTGTTAATTATATGGGAAAGGAGTATCAAAAGTTCCTCCTTCCTGAAGACTTTGAAATTCCGTCACATGATTTAAGATATCTTCATTGGGAAGGATACTCTTTGAAATCCTTGCCCTCAAATTTTCATGGAGAGAACCTCATTGAACTCAACTTGAAGCATAGCAATATAGAGCAGCTTTGGCAAGGGAAAAAGTATCTTGAAGAGTTAAAGATGTTGACTTTATCAGAATCTCAGCTGCTGAACGAAATACCACATTTCTCAAATATGCCAAATTTGGAGCAACTAAATATTGAACTTTGTGAAAAGTTGGATAAGGTTGACTCTTCGATTGGTATCCTGAAGAAGCTTACTTTATTGAATTTAAGAGGGTGCCAAAAGATTAGTAGTTTGCCAAGTACCATTCAATACTTGGTTTCTCTTAAAAGGCTTTATTTACATTCTATTGCTATTGACGAATTGCCCTCCTCAATACATCATCTCACCCAACTTCAAACACTATCTATTAGAGGATGCGAAAATTTGAGGAGTCTTCCAAGCAGCATTTGTAGGTTGAAATCCCTTGAAGAACTTGATCTCTATGGTTGTTCAAACTTAGGGACTTTTCCAGAAATCATGGAGAATATGGAATGGTTAACGGAGCTTAATTTAAGTGGCACGCATGTAAAAGGGCTTCCATCATCAATTGAATATCTAAATCATCTCACCCGTTTGGAGTTAAGATGTTGCAAAAATTTGAGGAGTCTTCCAAGCAGCATTTGGAGGTTGAAATCCCTTGAAGAACTTGATCTCTTTGGTTGTTCAAACTTGGAGACTTTTCCTGAAATCATGGAGGATATGGAATGCTTAATGGAGCTTAATTTAAGTAGAACGTGTATAAAAGAGCTTCCACCATCAATTGGATATCTAAATCATCTCACCTTTTTGGGGTTACAATGTTGCCAAAATTTGAGGAGTCTTCCAAGCAGCATTTGTAGGTTGAAATCCCTTGAAGAACTTGATCTCTATTATTGTTCAAACTTGGAGATTTTTCCAGAAATCATGGAGAATATGGAATGCTTAATTAAGCTTGATTTAAGTGGAACGCATATAAAAGAGCTTCCATCATCAATTGAATATCTAAATCATTTGACTTCAATGAGGTTGGTGGAGTCTAAAAACTTAAGGAGTCTTCCAAGCAGTATTTGTAGGTTGAAATTCCTTGAAAAACTTAATCTCTATGGTTGTTCACACTTGGAGACTTTCCCGGAAATCATGGAGGATATGGAATGCTTAAAGAAGCTTGATTTAAGTGGAACAAGTATAAAAAAGCTTCCATCATCAATTGGATATTTAAACCATCTTACTTCTTTTCGTTTGAGTTACTGCACAAACTTAAGGAGTCTTCCAAGCAGCATTGGTGGGTTGAAATCCCTTACAAAACTCTCTCTTAGTGGCCGTCCAAACAGGGTCACAGAGCAGTTGTTTCTAAGCAAAAACAATATTCATCACATACCTTCTGTTATTTCTCAACTTTGTAATCTGGAATGCCTTGATATTAGTCACTGCAAGATGCTTGAAGAAATTCCAGACCTTCCATCAAGTCTAAGAGAAATAGATGCACATGGTTGCACAGGCTTGGGAACTTTATCAAGTCCATCAAGTCTTCTATGGTCTTCTCTCCTCAAATGGTTCAAGAAAGTTGAGACTCCTTTTGAATGGGGAAGAATTAATCTAGGAAGTAATGGAATTCCCAGGTGGGTACTGCATCAGGAAGTGGGAAGCCAAATAAGAATAGAGCTTCCTATGAATTGTTATCATGATGACCACTTCCTTGGATTTGGATTTTTTTGTCTTTATGAACCAGTAGTGGATTTAAATTTATCTTTGAGATTTGATGAAGATTTAGATGAAAAAGCATATGCTTACAAGGGTGCTTCCTGGTGTGAATGCCACGACATTAATAGTAGTGAATCAGATGAAGTGTGGGTGGTGTACTGTCCTAAGATTGCTATTGGGGACAAGTTGCAGTCCAATCAATATAAGCATCTTCATGCCTCATTTGATGCTTGTATTATTGATTGTTCGAAGAATATTAAAAGTTGCGGGATCCATCTTGTATACTCTCAAGACTATCAGCAGAATCATATCTCATTGTTGGATTTTCGTGGCACCCAAGATGATGAAGACAACCATGTGCCCATGTTGAATTTTCCTAAGAATTCTGCTGACAACAGATCAACAGCAAAAGACATTAAGCGAAGCCATGATGATGCAGTACATGACCAAGCAGAGGAACCATACCATAAAAGATTGAGAGAATCCAACACCTATCTCAACTTTTAA 3486 36.09 MKMIFLIIFSSIFFGMNFHLKELKSLIKIESNDVRMIGIYGLGGIGKTTIAKVVYNNISHQFESRIFLENVRERSKDHSSLLQLQKELLNGVAKGKYLKISNIHEGVNVIRNRFLSKRVLLILDDVDKSEQLQFLVGEHGWFGPRSRIIITSRDQHLLEEYEMDASYEVKVLDYEESMQLFCLHAFKQNILRKDYVDLSNDVVNYVNGLPLALEILGSFLFNKSKLEWESTLQKLKRKPNMNVQNVLKISFDGLDEIEKEIFLDVACFFKGWNETDVTRLLDHANIVIRVLSDKCLITLSHNIIWMHDLVQEMGREIVRQNHPKEPGKWSRLWDPEDICLVLRRKMGTEAIEGIFLDMSRSREISFTTEAFRRMERLRLFKVYWSHGFVNYMGKEYQKFLLPEDFEIPSHDLRYLHWEGYSLKSLPSNFHGENLIELNLKHSNIEQLWQGKKYLEELKMLTLSESQLLNEIPHFSNMPNLEQLNIELCEKLDKVDSSIGILKKLTLLNLRGCQKISSLPSTIQYLVSLKRLYLHSIAIDELPSSIHHLTQLQTLSIRGCENLRSLPSSICRLKSLEELDLYGCSNLGTFPEIMENMEWLTELNLSGTHVKGLPSSIEYLNHLTRLELRCCKNLRSLPSSIWRLKSLEELDLFGCSNLETFPEIMEDMECLMELNLSRTCIKELPPSIGYLNHLTFLGLQCCQNLRSLPSSICRLKSLEELDLYYCSNLEIFPEIMENMECLIKLDLSGTHIKELPSSIEYLNHLTSMRLVESKNLRSLPSSICRLKFLEKLNLYGCSHLETFPEIMEDMECLKKLDLSGTSIKKLPSSIGYLNHLTSFRLSYCTNLRSLPSSIGGLKSLTKLSLSGRPNRVTEQLFLSKNNIHHIPSVISQLCNLECLDISHCKMLEEIPDLPSSLREIDAHGCTGLGTLSSPSSLLWSSLLKWFKKVETPFEWGRINLGSNGIPRWVLHQEVGSQIRIELPMNCYHDDHFLGFGFFCLYEPVVDLNLSLRFDEDLDEKAYAYKGASWCECHDINSSESDEVWVVYCPKIAIGDKLQSNQYKHLHASFDACIIDCSKNIKSCGIHLVYSQDYQQNHISLLDFRGTQDDEDNHVPMLNFPKNSADNRSTAKDIKRSHDDAVHDQAEEPYHKRLRESNTYLNF* 1162
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 27243702 27249772 + Vvi18g1657 Vvi18g1657 781360

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1657 1161 Gene3D Ribonuclease Inhibitor 873 968 IPR032675 -
Vvi18g1657 1161 PANTHER LEUCINE-RICH REPEAT-CONTAINING 728 855 - -
Vvi18g1657 1161 PANTHER LEUCINE-RICH REPEAT-CONTAINING 602 704 - -
Vvi18g1657 1161 PANTHER LEUCINE-RICH REPEAT-CONTAINING 488 615 - -
Vvi18g1657 1161 PANTHER LEUCINE-RICH REPEAT-CONTAINING 657 776 - -
Vvi18g1657 1161 Gene3D - 10 167 IPR027417 -
Vvi18g1657 1161 Gene3D Ribonuclease Inhibitor 593 743 IPR032675 -
Vvi18g1657 1161 Gene3D Ribonuclease Inhibitor 498 592 IPR032675 -
Vvi18g1657 1161 PANTHER TMV RESISTANCE PROTEIN N-LIKE 488 615 - -
Vvi18g1657 1161 PANTHER TMV RESISTANCE PROTEIN N-LIKE 728 855 - -
Vvi18g1657 1161 PANTHER TMV RESISTANCE PROTEIN N-LIKE 602 704 - -
Vvi18g1657 1161 PANTHER TMV RESISTANCE PROTEIN N-LIKE 657 776 - -
Vvi18g1657 1161 Pfam NB-ARC domain 25 247 IPR002182 GO:0043531
Vvi18g1657 1161 Gene3D - 171 255 IPR042197 -
Vvi18g1657 1161 Gene3D Ribonuclease Inhibitor 744 872 IPR032675 -
Vvi18g1657 1161 Pfam C-JID domain 961 1092 IPR045344 -
Vvi18g1657 1161 MobiDBLite consensus disorder prediction 1126 1148 - -
Vvi18g1657 1161 Pfam Leucine Rich Repeat 433 452 IPR011713 -
Vvi18g1657 1161 SMART LRR_typ_2 619 643 IPR003591 -
Vvi18g1657 1161 SMART LRR_typ_2 738 761 IPR003591 -
Vvi18g1657 1161 SMART LRR_typ_2 525 547 IPR003591 -
Vvi18g1657 1161 SMART LRR_typ_2 667 690 IPR003591 -
Vvi18g1657 1161 SMART LRR_typ_2 809 832 IPR003591 -
Vvi18g1657 1161 SMART LRR_typ_2 548 572 IPR003591 -
Vvi18g1657 1161 SMART LRR_typ_2 873 892 IPR003591 -
Vvi18g1657 1161 PRINTS Disease resistance protein signature 36 51 - -
Vvi18g1657 1161 PRINTS Disease resistance protein signature 113 127 - -
Vvi18g1657 1161 PRINTS Disease resistance protein signature 206 220 - -
Vvi18g1657 1161 PRINTS Disease resistance protein signature 570 586 - -
Vvi18g1657 1161 SUPERFAMILY L domain-like 655 946 - -
Vvi18g1657 1161 SUPERFAMILY Winged helix DNA-binding domain 243 342 IPR036390 -
Vvi18g1657 1161 SUPERFAMILY L domain-like 356 684 - -
Vvi18g1657 1161 Gene3D Ribonuclease Inhibitor 354 497 IPR032675 -
Vvi18g1657 1161 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 6 264 IPR027417 -
Vvi18g1657 1161 MobiDBLite consensus disorder prediction 1115 1148 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1657 - - - vvi:100243179 2295.78
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1657 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004792 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 24 24