Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1659 ATGGCACGAGGGAAAATTCAGATGAAGCGTATTGAGAACCCAGTACACAGGCAGGTTACCTTCTGCAAGCGCCGAGCAGGGCTTCTTAAGAAGGCTAAGGAGCTCTCTGTGTTGTGTGATGCTGAAATTGGGATTTTCATTTTCTCCGCCCATGGAAAGCTCTATGAACTAGCCACCAAAGGAACCATGCAAGGGCTTATTGAGAAGTACATGAAGTCTAGTTGCGGGTCTCAGGATGACCAAGCCAAAGAAGCACAACTTCTGGACACAAAAGAGGAGATTAACATGCTAAAGCATGAGATTGAATTACTTCAGAAAGGCCTCAGGTATATGTTGGGAGGTGGGGCTGGAACAATGACACTGGATGAACTACATATCTTTGAAAAACATCTTGAAATTTGGATCTATAACATCCGTTCAGCAAAGATGGAGATCATGTTTCAAGAAATCCAGCTATTGAAGAATAAGGAGGGAATACTGAAAGCAGCAAACAATTATCTCCAAGAAATGATAGACGACCAAACTGGAATTACCAACATTGCACCAATGATAAATCCATATCCACTAACTACACAAAATGAAATATTTCAAACTTAG 597 41.37 MARGKIQMKRIENPVHRQVTFCKRRAGLLKKAKELSVLCDAEIGIFIFSAHGKLYELATKGTMQGLIEKYMKSSCGSQDDQAKEAQLLDTKEEINMLKHEIELLQKGLRYMLGGGAGTMTLDELHIFEKHLEIWIYNIRSAKMEIMFQEIQLLKNKEGILKAANNYLQEMIDDQTGITNIAPMINPYPLTTQNEIFQT* 199
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 27268864 27284577 + Vvi18g1659 Vvi18g1659 781362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1659 198 Coils Coil 87 107 - -
Vvi18g1659 198 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Vvi18g1659 198 CDD MADS_MEF2_like 2 79 IPR033896 GO:0000977|GO:0045944
Vvi18g1659 198 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Vvi18g1659 198 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 56 IPR002100 GO:0003677|GO:0046983
Vvi18g1659 198 Gene3D - 15 76 IPR036879 GO:0003677|GO:0046983
Vvi18g1659 198 ProSiteProfiles K-box domain profile. 87 177 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vvi18g1659 198 Pfam K-box region 88 171 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vvi18g1659 198 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 197 - -
Vvi18g1659 198 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL12 1 197 - -
Vvi18g1659 198 SUPERFAMILY SRF-like 1 75 IPR036879 GO:0003677|GO:0046983
Vvi18g1659 198 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Vvi18g1659 198 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Vvi18g1659 198 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14298 PF01486 K-box 4.80E-21 No_clan Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1659 - - vvi:100253426 395.586