Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1662 ATGGAACTGAAACTGTGTCACACACCAATACTCACATTTTCATCTCAGAGGTTCTGTTTGGATTCGTGGATAAGCAAGCAGAGATCGTTCAAGAAGCATTTCCGAATGCTCACTGAGAAATGGAGGTTTCAAATTCAGGAGATTTCAAAGGGTCAACACTCCACCAAGCACAATTCAGTGCACATGGTCAAAGAAGGTGAAACTTTGAGTTCAATATCGAAGCAATATGGGGTGTCCATATATTCAATTGCTGCAGCTAATAAGAATATAGAGGATATTGACCTTGTATTCTGTGGGCAGCACCTCAATATTCCTTCTTCTGCTGTGGGAGAGACTCAGAAGTTTCAAACTGAGAAAAGCAAGTTATCTAGCTTTGATACATTGAAAAGACATCAACACTCTTTGGAAGTCTTGGGCGGGCGGTTAAACCAAAAGTTATGCACTGTGGCACTATCCTTCCATAGCTTATCACATGCTAAAGCAACTGGTTATTTTCTAGTTCTGGTTCCTCTTATAGCATTTTGCATCAGATGCATAATTGGTGCCTTTCAAAATAGAGTTGTTGGAGATTTGAGACATCAAGCTGTTAATGAATCAGAGGTAGATTATCATGGATCCAAAAGTGTACGGTGGAAATCTGCTCTTGATGACATAAGGGAACCAGATACTCTGGACACTGGACTGCAACCGGATTCCATTGTCAGTGCATCTGATTTTCAGTCAATGAGATGGAGGTTAAATTTATGTGATTAA 753 40.11 MELKLCHTPILTFSSQRFCLDSWISKQRSFKKHFRMLTEKWRFQIQEISKGQHSTKHNSVHMVKEGETLSSISKQYGVSIYSIAAANKNIEDIDLVFCGQHLNIPSSAVGETQKFQTEKSKLSSFDTLKRHQHSLEVLGGRLNQKLCTVALSFHSLSHAKATGYFLVLVPLIAFCIRCIIGAFQNRVVGDLRHQAVNESEVDYHGSKSVRWKSALDDIREPDTLDTGLQPDSIVSASDFQSMRWRLNLCD* 251
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 27308719 27312220 + Vvi18g1662 Vvi18g1662 781365

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1662 250 ProSiteProfiles LysM domain profile. 59 104 IPR018392 -
Vvi18g1662 250 Pfam LysM domain 61 105 IPR018392 -
Vvi18g1662 250 CDD LysM 60 104 IPR018392 -
Vvi18g1662 250 Gene3D LysM domain 52 120 IPR036779 -
Vvi18g1662 250 SUPERFAMILY LysM domain 60 105 IPR036779 -
Vvi18g1662 250 SMART LysM_2 60 105 IPR018392 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1662 - - - vvi:100241456 471.47
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1662 . Blo12g00831 . . . . . . . . . . . . . . . . . . . . . . Cla08g00064 Cam08g0061 Cec08g0190 Cco08g0119 Clacu08g0076 Cmu08g0074 Cre08g0066 . . . . . . . Cme09g00041 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi08g00050 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011440 0 3 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 0 1 1 1 30