Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1669 ATGGAATGGTTTTATGATGTGCATGGGGGTGGGGGAAGAGATGTTAATGCAAAGTTGAATGAAGTTGCTTTTGCTATGGAGAATACAAAGAAGGGTCCGAAACAGCGCCTCCATATTTTTATTTTCTTCATCCTACTTCCTTCCCGGATCTTCCCATTTATCATCTTCAACGTAACCAATGCGCACCAAACTCGACGTTTTTTATTCCTTTACGTAAAGTGCAACGAGGTTCGGCTTATTTTGCAATATATATATAAATTGTACCTTTGCTTGAATGTAGAGATAAGATGTGTTCGAGCTTTATGTTTGTGGAGGAATAGCTCTTCTGAAGTTAATGATGAGCTATTTAAGGGTTATCGTGAAGGAAATTTAGAGAAGAAGATCAATGAGTTTGCTGCAGCATTCGACTTCTCAAACTCCAACAAGACTAATTTTAATGTGACTATATGGTACAATTCAACTCATGAGCTAGCACGCTTGGTTAACCTGGTATGTATCATTTCTAAACTACATGACCTCCTTGCATCGAATGCCTACCTCCTGTCTCTGAAAGATGGTGGTACAAAGGTGCTATTAGATTTCATGAAGGGAATGCCCCAACCTAGCAGTAACCCACCCAGACTAGACGTTGCTTCTGCATTCGGAGTACTGTCATTTACTTGGGTTGTTATGCAATTTTTCCCTATGGTGTTGACATCTCTGGTTCAGGAGAAAGAAAGTAATCTGAGAATAATGATGAAAATACATGGCCTAGATGACAGACTTTATTGGGTGATTTCTTATACCTATTTTGTTCTCGAATTTGTTATCTACATGCTATGTCTGGTAGCATTTGCTTCAGTTCTAGGGTTACAATTCTTCACTATGAATGACTTCAAAATCCAATTTCTCTTCTACTTCATCGGTATAAACTTGCAAATTTCAATGGCATTTCTAATGGCGCCAATTCTTTCAAATGTTAAAATGATTACAGTAATAACATTCGCATTGCTTTTTGGATCAAGGCTCTCTGGGAAGTCTGTTTTTGAGTTCTTTCTTGAAGATACAACATTGTCAAGACATTGGATTATTGTTATGGAGCTATATCCTGCTTTCTCTCTTTACCGTGGTATATATGAGCTCGCACAATATTCTCTCATGGGTAGTGCAACAGGAACCCAAGGGATGCAATGGAGAGATTTGAGCGACCCTGAGAATGGGATGAGGGATGTCTGCATTATTATGATGGTCGAATGGTTGGTAGTACTTTTTATTGCATACGACATCGATCAACAACGAATATCATCAAGGAATGGATCAAACTTAAAAAGCCAAAAATTTTCTGCAGTTTCCCCACAGGTGGAAAATATTGACGTTTTCGAAGAGAGGGAGAAAGTTGAACGATGGCTGCATAAACCCACGTCGATTTATTCAATCATTTGTCATAATCTTGAAAAGGTGTATCCAGAAAGGGATGGAAACCCTAAGAAAATTGGAGTGAGGGGGTTGTCTCTAGCTATATCCAAAGGGGAGTGCTTTGGTATAGTTGGTGACAGTGATGCAGGCAAAACCTCTTTCATTAGTATGATGACTGGGATCACAAAGCCAACCTCTGGCAAAGCATTCATTGAAGGTCTGGATATAGAGAGTCAAATAAAAGAAATATATACAAGAATAGGTTATTGCCCTCAGATTGACCTTCTCTGGGAAACTCTAACTGGGAGGGAGCACCTCCAATTTTATGGAAGGGTTAAAAACCTCGTAGGTCCTGCCTTGACACAGGCGGTGGAAAACTCTCTTAGGAGAGTAAACCTTGTTCGTGGAGGTGTTGGTGACAAGGAAGTCAGTGAATATAGTAGATCAGAGAAGAGGAGGCTTAGTGTTGCCATTTCATTGATTGGAAATCCTCAAGTGGTCTTTATGGAAGAACCTACCGTTGGTTTAGATCCGGTATTGAGAACCAGTTTATGGAATGCTATAAAGCATGCAAAGCAAGATCGAACGATTATTTTGACAACACAATCAATGGAAGAGGCAGAGGCTCTATGTGATAGAATAGGAGTTCTAGCAGATGGCTGTTTGCAATGTATAGCCAGCCCTCGAGAGCTGAAGGCTAGATTTGAAAGATTTGAAGAATCTTCCACGTTTAAGGACACAACACCCCCCTGCCAGAAGGATGAGTTGCGTCGCCTTTTCGGTTTGCCAACTTCTAGTGGGTCAGTGGAAAAATAG 2211 40.21 MEWFYDVHGGGGRDVNAKLNEVAFAMENTKKGPKQRLHIFIFFILLPSRIFPFIIFNVTNAHQTRRFLFLYVKCNEVRLILQYIYKLYLCLNVEIRCVRALCLWRNSSSEVNDELFKGYREGNLEKKINEFAAAFDFSNSNKTNFNVTIWYNSTHELARLVNLVCIISKLHDLLASNAYLLSLKDGGTKVLLDFMKGMPQPSSNPPRLDVASAFGVLSFTWVVMQFFPMVLTSLVQEKESNLRIMMKIHGLDDRLYWVISYTYFVLEFVIYMLCLVAFASVLGLQFFTMNDFKIQFLFYFIGINLQISMAFLMAPILSNVKMITVITFALLFGSRLSGKSVFEFFLEDTTLSRHWIIVMELYPAFSLYRGIYELAQYSLMGSATGTQGMQWRDLSDPENGMRDVCIIMMVEWLVVLFIAYDIDQQRISSRNGSNLKSQKFSAVSPQVENIDVFEEREKVERWLHKPTSIYSIICHNLEKVYPERDGNPKKIGVRGLSLAISKGECFGIVGDSDAGKTSFISMMTGITKPTSGKAFIEGLDIESQIKEIYTRIGYCPQIDLLWETLTGREHLQFYGRVKNLVGPALTQAVENSLRRVNLVRGGVGDKEVSEYSRSEKRRLSVAISLIGNPQVVFMEEPTVGLDPVLRTSLWNAIKHAKQDRTIILTTQSMEEAEALCDRIGVLADGCLQCIASPRELKARFERFEESSTFKDTTPPCQKDELRRLFGLPTSSGSVEK* 737
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 27367071 27377291 + Vvi18g1669 Vvi18g1669 781372

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1669 736 SMART AAA_5 502 685 IPR003593 -
Vvi18g1669 736 Pfam ABC-2 family transporter protein 204 419 - -
Vvi18g1669 736 CDD ABC_subfamily_A 476 697 - -
Vvi18g1669 736 Pfam ABC transporter 494 638 IPR003439 GO:0005524
Vvi18g1669 736 PANTHER OS08G0398300 PROTEIN 89 701 - -
Vvi18g1669 736 PANTHER ATP-BINDING CASSETTE TRANSPORTER SUBFAMILY A ABCA 89 701 IPR026082 GO:0016021|GO:0055085|GO:0140359
Vvi18g1669 736 Gene3D - 464 722 IPR027417 -
Vvi18g1669 736 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 472 709 IPR003439 GO:0005524
Vvi18g1669 736 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 472 701 IPR027417 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1669 - - - vvi:100249943 1233.01
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1669 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001221 4 5 2 3 3 2 0 2 2 2 2 2 3 2 2 3 2 1 3 2 2 2 3 2 2 2 2 3 8 2 75