Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g167 ATGATCTTCTCACTTAACTCCGCTTCTTTTTTCTCTATTTCCCACACTTCACAGTCTGCACTTCTCTTCCCTCGAAACCCTAAATCGTGCTCTAGGGTTTTCAGAATCCTTAGAGCTTGCTCTAATTCCACCGACGAACCTCTCGTATCTGTTTCCGGCCGGAGAACTAATTACGCAGGAGTTCGATTGGAGGAGACCGTTGTCGATGTCAATTCCGATTCAGGAAAGCTGAGGCTGGATTCTTGGATTTCTTCTCGCATAATCGGTATAAGTAGGGCTAGAGTGCAATCGAGCATTCGGTCGGGGCTTGTAAGCGTTAATGACAGGATTGTCGATAAGGTTTCCCATGTTATCAGAGCTGGGGACAAGGTTAATTGCACAATATCGGAGTTGCAACCCTTAAGGGCTGAACCAGAGGATATACCTTTAGATATAGTTTATGAAGATGAACATGTACTGGTGGTCAACAAACCTGCACACATGGTTGTTCATCCTGCACCTGGCAATGCTAGTGGCACACTTGTAAATGGTATTCTTCACCATTGCAGTCTTCCCACAGTTGCATTGCCAAACAGGGACTCTGAGGAAGATGATATTTCGGATGATGAGTTCAATAGTTTTGCTGCAGGCCAGAATTGTGGCACATGTGAAACTAATATTCGCCCTGGAATTGTGCACAGATTAGACAAAGGCACCAGTGGATTGCTTGTTGTTGCGAAGGATGAACATTCTCATGCCCATTTATCTGAACAGTTCAAGCTACACTCCATCCACAGAGTATACATTAGTCTTACGTCTGGAGTACCCACTCCACTTTCTGGACGAGTGGAGATCCCAGTAGGTCGTGATCCAAATAATCGAATTCGCATGACTGCTGTTCCTGGACCTAGTAACTCTGGACAGGCCCGTCATGCTGCTAGTAGGTATAAAGTTATTGAAATACTTGCTGCTGGTGGTTCTGCATTGGTTGAGTGGAGATTAGAAACTGGGCGTACTCATCAGATTCGTGCACATGCCAAGTACCTGGGAATCCCTCTACTAGGAGATGAGGTCTATGGAGGAACTAAGAACATGGCCTTGTCTCTGCTTCGGCCCAGAATCCCATCTAGCCATCATGGTCAACTGGCACAGCTGGTTTCGAGATTGGATAGGCCTTGCCTCCATGCTGTGGCTCTTGGGTTTAACCATCCAAAAACAGGGAAGAACGTACACTTTTCTTGCCAACCTCCTGAAGATTTTGCTGAGATTTTGAGTTGGCTTCGTAAAATTAGCACAGAGAAGAAAAAAGGTCTGATATTGTAG 1302 45.55 MIFSLNSASFFSISHTSQSALLFPRNPKSCSRVFRILRACSNSTDEPLVSVSGRRTNYAGVRLEETVVDVNSDSGKLRLDSWISSRIIGISRARVQSSIRSGLVSVNDRIVDKVSHVIRAGDKVNCTISELQPLRAEPEDIPLDIVYEDEHVLVVNKPAHMVVHPAPGNASGTLVNGILHHCSLPTVALPNRDSEEDDISDDEFNSFAAGQNCGTCETNIRPGIVHRLDKGTSGLLVVAKDEHSHAHLSEQFKLHSIHRVYISLTSGVPTPLSGRVEIPVGRDPNNRIRMTAVPGPSNSGQARHAASRYKVIEILAAGGSALVEWRLETGRTHQIRAHAKYLGIPLLGDEVYGGTKNMALSLLRPRIPSSHHGQLAQLVSRLDRPCLHAVALGFNHPKTGKNVHFSCQPPEDFAEILSWLRKISTEKKKGLIL* 434
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 1677717 1683663 - Vvi18g167 Vvi18g167 779870

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g167 433 ProSitePatterns Rlu family of pseudouridine synthase signature. 225 239 IPR006224 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Vvi18g167 433 PANTHER RIBOSOMAL LARGE SUBUNIT PSEUDOURIDINE SYNTHASE D 75 422 - -
Vvi18g167 433 CDD S4 78 156 - -
Vvi18g167 433 PANTHER MITOCHONDRIAL RNA PSEUDOURIDINE SYNTHASE 75 422 - -
Vvi18g167 433 Pfam RNA pseudouridylate synthase 151 339 IPR006145 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Vvi18g167 433 SMART s4_6 77 142 IPR002942 GO:0003723
Vvi18g167 433 Gene3D Pseudouridine synthase 134 409 - -
Vvi18g167 433 ProSiteProfiles S4 RNA-binding domain profile. 77 150 - -
Vvi18g167 433 CDD PseudoU_synth_RluA_like 152 394 IPR006145 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Vvi18g167 433 SUPERFAMILY Pseudouridine synthase 137 421 IPR020103 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Vvi18g167 433 Pfam S4 domain 78 124 IPR002942 GO:0003723
Vvi18g167 433 SUPERFAMILY Alpha-L RNA-binding motif 77 130 - -
Vvi18g167 433 Gene3D - 62 132 IPR036986 GO:0003723
Vvi18g167 433 TIGRFAM rluA_subfam: pseudouridine synthase, RluA family 77 420 IPR006225 GO:0001522|GO:0003723|GO:0009451|GO:0009982
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g167 K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23] - vvi:100852977 852.047
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g167 . . . . . . . . . . . . . . . . . . . . . . . . Cla08g01399 Cam08g1878 Cec08g1455 Cco08g1589 Clacu08g1570 . Cre08g1354 . Cone7ag1911 . . . . . Cme03g01534 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi08g01295 . Chy03g01043 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005129 0 5 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 0 1 4 1 36