Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1684 ATGAATGGATATAGTACTTTGCTGTCTCCTGCAAAGCAACAGTATCATCCAGTTGGTGATCCAATTGAAAAGTCTGGAGCTGCGATCCAAGCTTCTGGTGAGGCTGTTTATGTGGACGATATTCCCTCTCCAACTAATTGCCTTCATGGGGCTTTCATTTATAGTACGAAGCCTTTCGCTCAAGTAAAGGGTATCAAACTTAGGCCTAAATCAGTGGGGGATGGAGTCAGTGCACTTATTTCTTTTAAAGATATCCCAGGGGAGAACATAGGCACTAAGAATAGATTTGGTACTGAACCTTTTTATTTGCTGATGATTTCACTCGATGTTGCAGACACACAGAAACATGCAGATATGGCAGCAAACCTTGCAGTGGTTGATTATGACATGGAAAATCTGGAACCACCCATTTTATCTGTTGAAGAGGCTGTTAGGAAGTCAAGCTTTTTTGAGGTTCCTTCTATCCTTAAACCAAAACAGGTTGGTGATTTCTCGAAAGGAATGGCTGAAGCTGATCACAAGATTCTCTCTGCTGAAATCAAACTTGGGTCACAATATTACTTCTATATGGAGACCCAAACTGCCCTTGCAGTTCCAGATGAAGATAACTGCATTGTGGTTTACAGTGCAATACAATGCCCTGAATATGCACATGGTGCGATTGCAAGATGTCTTGGTATTCCTGAACATAATGTACGTGTGATCACAAGAAGGGTTGGAGGTGGTTTTGGTGGAAAGGCCATAAGAGCAATGCCTGTTGCTACAGCATGTGCACTTGCAGCATACAAATTACACCGCCCTGTCCGGATATATATGAATCACAAAACTGATATGATAATAGCAGGAGGAAGACATCCAATGAAAGTAACCTACAGTGTAGGATTCAAATCTGATGGCAAAATTACTGCCTTACACCTTGATATATTAATCAATGCTGGAATAGCTGTAGACGTAAGCCCAGTTATGCCTCAGCACATGCTGGGAGCCCTTAAAAATTATGATTGGGGTGCTTTATCTTTTGATATAAAGTTGTGCAAAACAAACCATTCGTCTAAATCAGCAATGCGTGCCCCTGGGGAGGCACAAGCTATATTTATTTCTGAAGCTGTAATTGAACACATTGCATCTACTCTTTCTGTGGATGTGGACTCTGTGAGAATCAAAAACCTCCACACTTTCAACAGCCTCATTTTTTTCTTTGAGGGCAGTGCAGGTGAACCTTTTGAGTACACTTTACCTTCAATCTGGGATAAGTTGGCTACATCTTCAAGCTTTAAAGAAAGGACTGAAAAGATAAAGCAGTTTAATATGTGCAATAAATGGCGGAAAAGGGGTATTTCTCGAGTACCAATTGTGCATGAAGTTTCATTAAGACCGACTCCAGGGAAAGTAAGCATTCTTAGTGATGGATCTGTTGCTGTTGAAGTTGGAGGCATTGAATTGGGCCAGGGGCTGTGGACAAAGGTGAAACAGATGGCTGCATTTGCTCTCAGTTCAATTCAGTGTGATGGAATGGGAGACTTCTTGGAGAAAGTAAGGGTCATACAATCAGATACCTTAAGCTTAATACAAGGAGGACTTACTGCTGGAAGCACGACATCAGAGTCCACATGTGAAGCTATTAGACTCTGCTGCAATATGTTGGTTGAAAGACTAATTCCTATCAAGGAAAAATTGCAGGAGCAAATGGGTTCTGTTAAATGGAGCACACTAATTCTTCAGGCACAAAGTCAAGCTGTGAACTTATCAGCAAGTTCTTACTATGTCCCTGACTTTTCTTCCATGCGATACCTAAACTATGGTGCTGCAGTGAGTGAGGCAATAAATCTTCTCACTGGAGAAACCACAATTTTGCAATCTGATATTATATATGACTGTGGGCAAAGCCTCAACCCTGCTGTGGATTTAGGACAGATAGAAGGAGCTTTTGTTCAAGGAATTGGGTTTTTTATGCTTGAGGAATACACAACTAATGCAGATGGACTGGTGGTCACTAAAGGCACATGGACATACAAGATCCCAACAGTTGACACCATACCCAAGCAGTTCAATGTTGAGATAATGAACAGCGGACAGCATAAAAAACGTGTTCTTTCTTCTAAAGCTTCTGGTGAACCACCATTACTTCTAGCAGTTTCAGTCCACTGTGCTACAAGGGCAGCTATTAGAGAAGCCCGACAACAGCTTCTTCGTTGGACAGGGCTAAACAAGTCCGATTCAACATTCCAATTGGAGGTCCCAGCAACAATGCCTGTTGTGAAGAAGCTCTGTGGATTGGACAATGTGGAGAATTATTTACAAAGCTTGCTTTCTTAA 2316 41.67 MNGYSTLLSPAKQQYHPVGDPIEKSGAAIQASGEAVYVDDIPSPTNCLHGAFIYSTKPFAQVKGIKLRPKSVGDGVSALISFKDIPGENIGTKNRFGTEPFYLLMISLDVADTQKHADMAANLAVVDYDMENLEPPILSVEEAVRKSSFFEVPSILKPKQVGDFSKGMAEADHKILSAEIKLGSQYYFYMETQTALAVPDEDNCIVVYSAIQCPEYAHGAIARCLGIPEHNVRVITRRVGGGFGGKAIRAMPVATACALAAYKLHRPVRIYMNHKTDMIIAGGRHPMKVTYSVGFKSDGKITALHLDILINAGIAVDVSPVMPQHMLGALKNYDWGALSFDIKLCKTNHSSKSAMRAPGEAQAIFISEAVIEHIASTLSVDVDSVRIKNLHTFNSLIFFFEGSAGEPFEYTLPSIWDKLATSSSFKERTEKIKQFNMCNKWRKRGISRVPIVHEVSLRPTPGKVSILSDGSVAVEVGGIELGQGLWTKVKQMAAFALSSIQCDGMGDFLEKVRVIQSDTLSLIQGGLTAGSTTSESTCEAIRLCCNMLVERLIPIKEKLQEQMGSVKWSTLILQAQSQAVNLSASSYYVPDFSSMRYLNYGAAVSEAINLLTGETTILQSDIIYDCGQSLNPAVDLGQIEGAFVQGIGFFMLEEYTTNADGLVVTKGTWTYKIPTVDTIPKQFNVEIMNSGQHKKRVLSSKASGEPPLLLAVSVHCATRAAIREARQQLLRWTGLNKSDSTFQLEVPATMPVVKKLCGLDNVENYLQSLLS* 772
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 27491473 27505772 - Vvi18g1684 Vvi18g1684 781387

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1684 771 Pfam Molybdopterin cofactor-binding domain 159 390 IPR008274 GO:0016491
Vvi18g1684 771 Gene3D Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead 5 131 - -
Vvi18g1684 771 Pfam Molybdopterin cofactor-binding domain 419 680 IPR046867 -
Vvi18g1684 771 Pfam Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain 32 130 IPR000674 -
Vvi18g1684 771 Gene3D Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding domain 459 595 - -
Vvi18g1684 771 SUPERFAMILY Molybdenum cofactor-binding domain 135 758 IPR037165 GO:0016491
Vvi18g1684 771 PANTHER XANTHINE DEHYDROGENASE 11 770 IPR016208 GO:0005506|GO:0016491
Vvi18g1684 771 PANTHER INDOLE-3-ACETALDEHYDE OXIDASE 11 770 - -
Vvi18g1684 771 SMART Ald_Xan_dh_C_2 32 132 IPR000674 -
Vvi18g1684 771 Gene3D Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding domain 422 749 - -
Vvi18g1684 771 SUPERFAMILY CO dehydrogenase molybdoprotein N-domain-like 12 132 IPR036856 -
Vvi18g1684 771 Gene3D Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding domain 161 391 - -
Vvi18g1684 771 Gene3D Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding domain 187 281 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1684 K09842 AAO3; abscisic-aldehyde oxidase [EC:1.2.3.14] - vvi:100265098 1349.73
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1684 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002077 2 2 1 1 1 4 0 2 2 2 1 2 5 2 1 5 2 1 3 2 2 2 2 2 1 2 2 3 4 4 65