Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1685 ATGGAGCAGTCTGAATCAACTGTAAACAACAGTTTGGTTTTTGCTGTTAATGGGAAAAGGTTTGAGGTCTCCACCATCCACCCTTCCACTACTTTGCTTGAATTCTTGCGTTCTCACACTCCTTTCAAAGGTGCCAAGCTCAGCTGCGGTGAAGGTGGTTGTGGTGCTTGCGTTGTCCTACTTTCCAAGTATAATCCTGTGCTTGACCAGGTGGATGATTTTACCGTGAGTTCATGTCTTACCCTGCTTTGTAGTATAAATGGATGTTCAATTACAACAACTGAAGGCCTTGGGAACACGAAAGATGGGTTCCACCCAATTCATGAAAGGTTCTCTGGATTCCATGCTTCTCAGTGTGGCTTTTGTACTCCTGGAATGTGCATGTCACTCTTCTCTGCTCTTGTCAATGCTGAGAAAATCCTCAGGCCAGAGCCCCCACTGGGATTCTCCAAATTGAAAGTTTCTGAAGCGGGGAAAGGGCTATTGCAGGAAATCTCTGCCGCTGTACTGGGTATTGCCCCATTGCTGATGCCTGTAAAAGTTTTGCAGCAGATGTTGATATGGAGGATTTGGGGTTTAATTCCTTTTGGAGAAAGGGTGATAGTAAAGAAGTGA 615 45.2 MEQSESTVNNSLVFAVNGKRFEVSTIHPSTTLLEFLRSHTPFKGAKLSCGEGGCGACVVLLSKYNPVLDQVDDFTVSSCLTLLCSINGCSITTTEGLGNTKDGFHPIHERFSGFHASQCGFCTPGMCMSLFSALVNAEKILRPEPPLGFSKLKVSEAGKGLLQEISAAVLGIAPLLMPVKVLQQMLIWRIWGLIPFGERVIVKK* 205
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 27505817 27508135 - Vvi18g1685 Vvi18g1685 781388

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1685 204 Pfam 2Fe-2S iron-sulfur cluster binding domain 15 82 IPR001041 GO:0051536
Vvi18g1685 204 Gene3D - 7 96 IPR012675 -
Vvi18g1685 204 PANTHER XANTHINE DEHYDROGENASE 7 162 IPR016208 GO:0005506|GO:0016491
Vvi18g1685 204 PANTHER INDOLE-3-ACETALDEHYDE OXIDASE-LIKE 7 162 - -
Vvi18g1685 204 CDD fer2 12 92 IPR001041 GO:0051536
Vvi18g1685 204 Gene3D - 97 167 - -
Vvi18g1685 204 ProSitePatterns 2Fe-2S ferredoxin-type iron-sulfur binding region signature. 49 57 IPR006058 GO:0051537
Vvi18g1685 204 SUPERFAMILY 2Fe-2S ferredoxin-like 11 98 IPR036010 GO:0051536
Vvi18g1685 204 Pfam [2Fe-2S] binding domain 93 138 IPR002888 GO:0016491|GO:0046872
Vvi18g1685 204 ProSiteProfiles 2Fe-2S ferredoxin-type iron-sulfur binding domain profile. 10 97 IPR001041 GO:0051536
Vvi18g1685 204 SUPERFAMILY CO dehydrogenase ISP C-domain like 105 139 IPR036884 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1685 K09842 AAO3; abscisic-aldehyde oxidase [EC:1.2.3.14] K11817 vvi:100255199 311.612
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1685 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0070666 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1