Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1686 ATGGAGCAGTCTGAATCAACTGTAAACAACTGTCTGGTTTTTGCTGTTAATGGAAAGAGGTTTGAGGTCTCCACCATCCACCCTTCCACTACCGTGCTTGAGTTCTTGCGTTCTCACACTCCTTTCAAAGGTCCCAAGCTCAGCTGCGGTGAAGGTGGTTGTGGTGCTTGTGTTGTTCTACTGTCCAAGTATAACCCTGTGCATGACCAGGTGGATGATTGTACGGTGAGTTCATGTCTTACCCTGCTTTGTAGTGTAAATGGATGTTCAATTACAACAACTGAAGGCCTTGGGAACACGAAAGATGGATTCCACCCAATTCATGAAAGGTTCTCTGGATTCCATGCTTCTCAGTGTGGCTTTTGTACTCCTGGAATGTGCATGTCACTCTTCTCGGCTCTTGTCAATGCTGAGAAAACCCCCCGGCCAGAGCCCCCTAGGGGATTCTCCAAGCTGAAAGTTTCTGAAGCTGAAACGGCTATTGCAGGAAATCTCTGCCGCTGTACTGGATACCGGCCCATTGCTGATGCCTGTAAAAGTTTTGCAGCAGATGTTGATATGGAGGATTTGGGGTTTAATTCCTTTTGGAGAAAGGGAGATAGTAAAGAAGTGAAACTAAGCAGCTTACCCCTGTATAACCATAATGATGAGATCTGTACATTTCCTCAGTTCTTGAAAAATGAAACTAGGTCTACATTGCTTTTAGACTCTAGTAGATATTCCTGGTATAATCCTGTTACCATTGAGGAACTTCAAAGCTTATTGGGTTTTGTTGAGGATGGAAATGGGACTCGGGTTAAATTAGTGGTTGGTAACACTGGTATGGGTTATTACAAGGAAGTGGAAAGCTACGACAAATATATTGATCTAAGACATATCCCTGAATTCTCAACGATTAGAAGGGATAATACCGGGATAAGCATTGGAGCAACTATAACAATATCTAAAGCTATTGAAGCTCTAAGGGAATACAACCAAAGTGGATTTTACTCAGAAGGAGACATGGTCTATAAAAAAATTGCTGACCATATGGAAAAAGTTGCTTCAGGGTTCATCCGGAACTCAGCTAGTTTAGGTGGAAATCTGGTGATGGCACAAAGGAATCATTTCCCCTCCGACATTGCTACAGTACTTCTTGCAGTAGGTTCAACTGTAAATATAATGAATAGTCTCAAAAGCGAAGAGCTTACATTGGAGGAGTTCTTAAGAAGGCCAGAGTTAGATTCGAAAAGTATACTTTTTGCTTTTGGTGCTTATGGGACAAAACATCCAATAAGAGCGACAAAAGTTGAAGAATTTTTAACTGGAAAAGTGCTAAGTGTTGGTGTTCTATGTGAGGCTGTTAAATTACTTAGAGGCATTGTGGTACCTGATGATGGCACTTCAAGTCCAGCTTATAGGTCAAGCTTGGCTGTCAGTTTTCTTTTTGAGTTCTTTAGCCATTTGTTAGATCATGGTAAAATCTCAACCTTGCTATCTTCTGCAAAGCAGGAAGTGGAATTGAACAGACAGTATCGTCCAGTTGGTGAGCCAATTGCAAAGTCTGGGGCTGCCATCCAAGCTTCTGGGGAGGCTGTTTATGTGGATGACATTCCCTCTCCAACAAATTGCCTACATGGGGCTTTCATTTATGGTACAAAGCCTTTGGCTCGAGTAAAGGGTATCAAACTTAACCCCAAATCAGTGGCAGCTGGAGTCAGTGCACTTATTTCTTTTAAAGATATCCCAGGGGAGAACATAGGCTGTAAAACTATGTTTGGTACTGAACCTTTATTTGCAGATGATTTTACCCGATGTGCTGGAGAGTATATTGCTTTTGTGGTTGCAGACACACAGAAACATGCAAATATGGCTGCAAACCTTGCAGTGATCGATTATGACATGGAAAATCTGGAACCACCCATTTTATCGGTAGAAGAGGCTGTTAGGAGATCTAGCTTTTTTGAGGTTCCTTCCATCATTAGCCCAAAACAGGTTGGTGATTTCTCTAGAGGAATGGCTGAAGCAGATCACAAGATTCTCTCTGCTGAGATCAGACTTGGGTCACAGTATTATTTCTATATGGAGACACAAACTGCCCTTGCAGTTCCCGATGAAGACAACTGCATTGTGGTTTACAGTTCAATACAATGCCCTGAAAATGCACATACTACGATTTCGAGATGTCTTGGTATTCCTGAACACAATGTCCGTGTGATCACAAGAAGGGTTGGAGGTGGTTTTGGTGGAAAGGCCATGAAAGCAATTGCTGTAGCTACAGCATGTGCACTTGCAGCATACAAATTACAACGCCCTGTCCGGATATATATGAATCGCAAAACTGACATGAAAATAGCTGGAGGAAGACATCCAATGAAAGTACAAGCTACATTTATATCTGAAGCTGTAATTGAACATGTCGCATCTACTCTTTCCATGGATGTGGACTCTGTGAGAAGCGGAAACCTCCACACTTTCAACAGCCTCAATTTTTTCTTTGAGGGCTGTGCTGACTTCTTGGAGAAAGTAAGGGTCATACAATCAGATACCCTAAGTTTAATACAGGGGGGGTTGACTACTGCAAGCACTACATCAGAGTGCAGCTGTGAAGCTATTAGACTCTGCTGCAATATGTTGGTTAAAAGACTGACTCCTATCAAGGAGAGATTGCAGGAGCAAATGGGTTCTGTTGAATGGGGCACATTGATTCTTCAGGCACAAAGTCAAGCTGTGAACTTATCAGCAAGTTCTTACTATGTCCCTGACTTTTCTTCCTTTCAATACCTAAACTATGGTGCAGCAGTGAGTGAGGTGGAGGTAAATCTTCTCACTGGACAAACCACAATTTTGCAATCTGATATTATATATGACTGTGGTCAGAGTCTCAACCCTGCTGTGGATTTAGGACAGATAGAAGGAGCTTTTGTTCAAGGAATTGGGTTTTTTATGCTCGAGGAGTACACAACTAATTCAGATGGACTGGTGGTCACCGAAGGCACATGGACTTACAAGATCCCAACAATCGACACAATACCCAAGCAGTTCAATGTTGAGGTACTGAACAGCGGACATCATAAAAATCGTGTTCTTTCTTCTAAAGCTTCTGGTGAACCACCGTTACTCCTAGCTGTTTCAGTTCATTGTGCTACAAGGGCAGCTATTAGAGAAGCCCGGCAACAGCTTCTTTCCTGGACTGGGCTAACCAAGTGTGATTCAACATTCCAGTTGGAGGTCCCGGCAACAATGCCTGTTGTGAAGGAGCTCTGTGGACTGGAGAATGTGGAGAGTTACTTGCAAAGCTTGCTCTCTTAA 3291 42.72 MEQSESTVNNCLVFAVNGKRFEVSTIHPSTTVLEFLRSHTPFKGPKLSCGEGGCGACVVLLSKYNPVHDQVDDCTVSSCLTLLCSVNGCSITTTEGLGNTKDGFHPIHERFSGFHASQCGFCTPGMCMSLFSALVNAEKTPRPEPPRGFSKLKVSEAETAIAGNLCRCTGYRPIADACKSFAADVDMEDLGFNSFWRKGDSKEVKLSSLPLYNHNDEICTFPQFLKNETRSTLLLDSSRYSWYNPVTIEELQSLLGFVEDGNGTRVKLVVGNTGMGYYKEVESYDKYIDLRHIPEFSTIRRDNTGISIGATITISKAIEALREYNQSGFYSEGDMVYKKIADHMEKVASGFIRNSASLGGNLVMAQRNHFPSDIATVLLAVGSTVNIMNSLKSEELTLEEFLRRPELDSKSILFAFGAYGTKHPIRATKVEEFLTGKVLSVGVLCEAVKLLRGIVVPDDGTSSPAYRSSLAVSFLFEFFSHLLDHGKISTLLSSAKQEVELNRQYRPVGEPIAKSGAAIQASGEAVYVDDIPSPTNCLHGAFIYGTKPLARVKGIKLNPKSVAAGVSALISFKDIPGENIGCKTMFGTEPLFADDFTRCAGEYIAFVVADTQKHANMAANLAVIDYDMENLEPPILSVEEAVRRSSFFEVPSIISPKQVGDFSRGMAEADHKILSAEIRLGSQYYFYMETQTALAVPDEDNCIVVYSSIQCPENAHTTISRCLGIPEHNVRVITRRVGGGFGGKAMKAIAVATACALAAYKLQRPVRIYMNRKTDMKIAGGRHPMKVQATFISEAVIEHVASTLSMDVDSVRSGNLHTFNSLNFFFEGCADFLEKVRVIQSDTLSLIQGGLTTASTTSECSCEAIRLCCNMLVKRLTPIKERLQEQMGSVEWGTLILQAQSQAVNLSASSYYVPDFSSFQYLNYGAAVSEVEVNLLTGQTTILQSDIIYDCGQSLNPAVDLGQIEGAFVQGIGFFMLEEYTTNSDGLVVTEGTWTYKIPTIDTIPKQFNVEVLNSGHHKNRVLSSKASGEPPLLLAVSVHCATRAAIREARQQLLSWTGLTKCDSTFQLEVPATMPVVKELCGLENVESYLQSLLS* 1097
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 27514536 27525652 - Vvi18g1686 Vvi18g1686 781389

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1686 1096 PANTHER XANTHINE DEHYDROGENASE 787 830 IPR016208 GO:0005506|GO:0016491
Vvi18g1686 1096 PANTHER XANTHINE DEHYDROGENASE 485 787 IPR016208 GO:0005506|GO:0016491
Vvi18g1686 1096 PANTHER XANTHINE DEHYDROGENASE 827 1092 IPR016208 GO:0005506|GO:0016491
Vvi18g1686 1096 PANTHER XANTHINE DEHYDROGENASE 8 414 IPR016208 GO:0005506|GO:0016491
Vvi18g1686 1096 PANTHER XANTHINE DEHYDROGENASE 414 484 IPR016208 GO:0005506|GO:0016491
Vvi18g1686 1096 ProSiteProfiles PCMH-type FAD-binding domain profile. 235 448 IPR016166 GO:0071949
Vvi18g1686 1096 Gene3D - 8 96 IPR012675 -
Vvi18g1686 1096 PANTHER INDOLE-3-ACETALDEHYDE OXIDASE-LIKE 8 414 - -
Vvi18g1686 1096 PANTHER INDOLE-3-ACETALDEHYDE OXIDASE-LIKE 485 787 - -
Vvi18g1686 1096 PANTHER INDOLE-3-ACETALDEHYDE OXIDASE-LIKE 414 484 - -
Vvi18g1686 1096 PANTHER INDOLE-3-ACETALDEHYDE OXIDASE-LIKE 787 830 - -
Vvi18g1686 1096 PANTHER INDOLE-3-ACETALDEHYDE OXIDASE-LIKE 827 1092 - -
Vvi18g1686 1096 SUPERFAMILY Molybdenum cofactor-binding domain 635 1084 IPR037165 GO:0016491
Vvi18g1686 1096 Pfam Molybdopterin cofactor-binding domain 833 1005 IPR046867 -
Vvi18g1686 1096 CDD fer2 12 92 IPR001041 GO:0051536
Vvi18g1686 1096 Gene3D Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding domain 634 791 - -
Vvi18g1686 1096 SMART Ald_Xan_dh_C_2 522 630 IPR000674 -
Vvi18g1686 1096 SUPERFAMILY 2Fe-2S ferredoxin-like 13 98 IPR036010 GO:0051536
Vvi18g1686 1096 PIRSF Xanthine_dh 4 413 IPR016208 GO:0005506|GO:0016491
Vvi18g1686 1096 PIRSF Xanthine_dh 406 789 IPR016208 GO:0005506|GO:0016491
Vvi18g1686 1096 PIRSF Xanthine_dh 829 1095 IPR016208 GO:0005506|GO:0016491
Vvi18g1686 1096 PIRSF Xanthine_dh 786 832 IPR016208 GO:0005506|GO:0016491
Vvi18g1686 1096 Pfam CO dehydrogenase flavoprotein C-terminal domain 410 481 IPR005107 -
Vvi18g1686 1096 Pfam 2Fe-2S iron-sulfur cluster binding domain 15 82 IPR001041 GO:0051536
Vvi18g1686 1096 Pfam [2Fe-2S] binding domain 93 178 IPR002888 GO:0016491|GO:0046872
Vvi18g1686 1096 Gene3D - 208 293 IPR016167 -
Vvi18g1686 1096 Pfam Molybdopterin cofactor-binding domain 657 788 IPR008274 GO:0016491
Vvi18g1686 1096 Pfam Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain 522 628 IPR000674 -
Vvi18g1686 1096 Gene3D Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding domain 829 890 - -
Vvi18g1686 1096 SUPERFAMILY FAD-binding/transporter-associated domain-like 203 414 IPR036318 GO:0050660
Vvi18g1686 1096 ProSitePatterns 2Fe-2S ferredoxin-type iron-sulfur binding region signature. 49 57 IPR006058 GO:0051537
Vvi18g1686 1096 Gene3D Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding domain 891 1092 - -
Vvi18g1686 1096 Pfam FAD binding domain in molybdopterin dehydrogenase 239 413 IPR002346 GO:0016491
Vvi18g1686 1096 SUPERFAMILY CO dehydrogenase flavoprotein C-terminal domain-like 410 485 IPR036683 -
Vvi18g1686 1096 Gene3D - 97 207 - -
Vvi18g1686 1096 Gene3D Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding domain 521 780 - -
Vvi18g1686 1096 SUPERFAMILY CO dehydrogenase ISP C-domain like 105 222 IPR036884 -
Vvi18g1686 1096 Gene3D Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead 538 633 - -
Vvi18g1686 1096 ProSiteProfiles 2Fe-2S ferredoxin-type iron-sulfur binding domain profile. 10 97 IPR001041 GO:0051536
Vvi18g1686 1096 Gene3D - 294 417 IPR016169 -
Vvi18g1686 1096 SUPERFAMILY CO dehydrogenase molybdoprotein N-domain-like 488 627 IPR036856 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1686 K09842 AAO3; abscisic-aldehyde oxidase [EC:1.2.3.14] - crb:17885398 1157.9
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1686 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002077 2 2 1 1 1 4 0 2 2 2 1 2 5 2 1 5 2 1 3 2 2 2 2 2 1 2 2 3 4 4 65