Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1687 ATGGAGCAGTCTGAATCAACCGTAAACAACAGTCTGGTTTTTGCTGTTAATGGCAAGAGGTTTGAGGTCTCCACCATCCACCCTTCCACTACTGTGCTTGAATTCTTGCGTTCTCACACTCCTTTCAAAGGTCCCAAGCTCAGCTGCGGTGAAGGTGGTTGTGGTGCTTGTGTTGTTCTACTGTCCAAGTATAACCCTATACTTGACCAGTTGGATGATTGTACGGTGAGTTCATGTCTTACCCTGCTTTGTAGTGTAAATGGATGTTCAATTACAACAACTGAAGGTCTTGGGAACTCGAAAGATGGGTTCCACCCAATTCATGAAAGGTTCTCTGGATTCCATGCTTCTCAGTGTGGCTTTTGTACTCCTGGAATGTGCATGTCACTCTTCTCGGCTCTTGTCAATGCTGAGAAAACCCCCCGGCCAGAGCCCCCTCTGGGATTCTCCAAGCTGAAAGTTTCTGAAGCGGAAAGGGCTATTGCAGGAAATCTCTGCCGCTGTACTGGGTACCGGCCCATTGCTGATGCCTGTAAAAGTTTTTCAGCAGATGTTGATATGGAGGATTTGGGGTTTAATTCCTTTTGGAGAAAGGGGGATAGTAAAGAAGTGAAACTAAGCAGCTTACCCTTGTATAACCATAGTGATGAGATTTGTACATTTCCTGAATTCTTGAAAAATGAAACTAGGTCTACACTGCTTTTAGACTCTAGAAGATATTCCTGGTATAGTCCTGTTAGCATTGAGGAACTTCAAAGATTACTGGGTTTTGTTGAGGATGGAAATGGGAGTCGGGTTAAAGTAGTTGTTGGTAACACTGGTATGGGTTATTATAAGGAAGTAGAAAGTTATGACAAATATATTGATCTAAGACATATCCCTGAATTCTCAATGATAAGAAGGGATAATACCGGGATAAGCATTGGAGCAACAGTAACAATCTCTAAAGCTATTGAAGCTCTAAGGGAATACAACCAAAGTGGATTTTACTCAGAAGGAGACATGGTCTATAAAAATATTGCTGACCATATGGAAAAAGTTGCTTCAGGGTTCATCCGGAACTCAGCTAGTTTAGGTGGAAATCTGGTGATGGCACAAAGGAATCATTTCCCCTCTGACATTGCTACAGTACTTCTTGCAGTAGGTTCAACCGTAAATATAATGAATAGTCTCAAAAGCGAAGAGCTTACATTGGAGGAGTTCTTGAGAAGGCCAGAGTTAGATTCGAAAAGTATACTTGTAGGTGTCAAAATCCCAGATCGGGATCGGATTATGGGCATTTCTTCAGGGACCAAGATGAAGTTACTGTTTGAAACTTATCGAGCTGCACCGCGACCGTTAGGAAATGCATTGCCCTATTTAAATGCTGCTTTAATGGCTAAAGTTTCTCGCTGTACAACTTCTAATGGAATTATTGTAAGTAACTGCCGGTTTGCTTTTGGTGGTTATGGGACAAAACATCCAATAAGAGCTACAAAAGTTGAAGAATTTTTAACTGGAAAAGTGCTAAGTGTTGGTGTCCTTTGTGAAGCTGTTAAATTACTAAAAGGCATTGTGGTACCCGATGATGGCACTTCAAGTCCAGCTTATAGGTCAAGCTTGGCTGTCAGTTTTCTTTTCGAGTTCTTTAGCCATTTGGTTGAGGCCAATGCTAAATCTCCTGATGGTTGTGTGGATGGATATAGTACTTTGCTGTCTCCTGCAAAGCAGTTAGATCATGGTAAAATCTCAACCTTGCTGTCTTCTGCAAAGCAGGAAGTGGAATTGAATAGACAGTATCATCCTGTTGGTGAGCCAATTGCAAAGTCTGGGGCTGCCATCCAAGCTTCTGGTGAGGCCGTTTATGTGGATGACATTCCTTCTCCAACAAATTGCCTACATGGGGCTTTCATTTATAGTACAAAGCCTTTGGCTCGAGTAAAGGGTATCAAACTTAACCCCAAATCAGTGGCAGATGGAGTCAGTGCGCTTATTTCATTTAAAGATATACCAGGGGAGAACATAGGCTGTAAGACTATATTTGGTACTGAACCTTTATTTGCAGATGATTTTACCCGATGTGCTGGAGAGTATATTGCTTTTGTGGTTGCAGACACACAGAAACATGCAAATATGGCCGCAAACCTTGCAGTGGTTGATTATGACATGGAAAATCTGGAACCACCCATTTTATCGGTAGAAGAGGCTGTTAGGAGATCCAGCTTTTTTGAGGTTCCTTCCTTCATTAGCCCAAAACAGGTTGGTGATTTCTCTAGAGGAATGGCTAAAGCTGATCACAAGATTCTTTCTGCTGAGATCAGACTTGGGTCACAGTATTATTTCTATATGGAGACACAAACTGCCCTTGCAATTCCGGATGAAGACAACTGCATTGTGGTTTACAGTTCAATACAGTGCCCTGAAAATGCACATACTACAATTTCGAGATGTCTTGGTATTCCTGAACACAATGTACGTGTGATCACAAGAAGGGTTGGAGGTGGTTTTGGTGGAAAGTCCATGAAAGCAATTGCTGTAGCTACAGCATGTGCACTTGCAGCATACAAATTACAACGCCCTGTCCGGATATATATGAATCGCAAAACTGACATGAAAATAGCAGGAGGAAGACATCCAATGAAAGTAACCTACAGTGTAGGGTTCAAATCGAATGGGAAGATTACTGCCTTACACGTTGATATATTAATCAACGCAGGAATAGGTGTAGATATAAGCCCAATTATGCCCATGCTCATGGTTGGTGCCCTTAAAAAATATGATTGGGGTGCTTTTTCTTTTGATATAAAGGTATGCAAAACAAACCATTTGTCTAAATCAGCAATGCGTGCTCCTGGAGAGGTACAAGCTACATTTATATCCGAAGCTGTAATTGAACATGTTGCATCTACTCTTTCCATGGATGTGGACTCTGTGAGAAGCAGAAACCTCCACACTTTCAACAGCCTCAATTTTTTCTTTGAGGGCTGTGCTGGTGAACATGTGGAGTACACTTTACCTTTAATCTGGGATAAGTTGGCTACGTCTTCAAGCTTTAAAGAAAGGACCGATATGATAAAGCAGTTTAATATGTGCAATAAATGGCAGAAAAGGGGTATTTCTCGAGTACCAATTGTGCATGAAGTTTCATTAAAAGCAACTCCAGGGAAAGTAAGCATTCTTAGCGATGGATCTGTTGCTGTCGAAGTTGGAGGGATTGAGTTGGGGCAGGGGCTGTGGACAAAGGTGAAACAGATGACTGCATTTGCTCTCATTTCAATTGGATGTGATGGAATGGGAGACTTCTTGGAGAAAGTAAGGGTCATACAATCAGATACCTTAAGTTTAATACAGGGGGGGTTGACTGCTGGAAGCACTACATCAGAGTGCAGCTGTGAAGCTATTAGACTCTGCTGCAATATGTTGGTTGAAAGACTGAATCCTATCAAGGAGAGATTGCAGGAGCAAATGGGTTCTGTTGAATGGGGCACATTGATTCTTCAGGCACAAAGTCAAGCTGTGAACTTATCAGCAAGTTCTTACTATGTCCCTGACTTTTCTTCCTTTCAATACCTAAACTATGGTGCAGCAGTGAGTGAGGTGGAGGTAAATCTTCTCACTGGACAAACCACAATTTTGCAATCTGATATTATATATGACTGTGGTCAGAGTCTCAACCCTGCTGTGGATTTAGGACAGATAGAAGGAGCTTTTGTTCAAGGAATTGGGTTTTTTATGCTGGAAGAGTACACAACTAATTCAGATGGACTGGTGGTCACCGAAGGCACATGGACATACAAGATCCCAACAATCGACACCGTACCCAAGCAGTTCAATGTGGAGGTACTGAACAGCGGACATCATAAAAATCGTGTTCTTTCTTCTAAAGCTTCTGGTGAACCACCGTTACTTCTAGCTGTTTCAGTTCATTGTGCTACAAGGGCTGCTATTAGAGAAGCCCGGCAACAGCTTCTTTCCTGGACTGGGCTAACCAACTTGGGTGGAGATGATGACATGTATTTGTGCATGCTAAAAGCCAAGTATCATACTTGGGAGGAGTTTCTTTATAAGTCCTTAATTCCAACTTTTTTTTTTCTTTTTTCTTTAGTTTGCTTTTATTTATTTGTCGATTCTTTAGATGATGCTTATATGAGTTGTGGATATTGA 4143 41.68 MEQSESTVNNSLVFAVNGKRFEVSTIHPSTTVLEFLRSHTPFKGPKLSCGEGGCGACVVLLSKYNPILDQLDDCTVSSCLTLLCSVNGCSITTTEGLGNSKDGFHPIHERFSGFHASQCGFCTPGMCMSLFSALVNAEKTPRPEPPLGFSKLKVSEAERAIAGNLCRCTGYRPIADACKSFSADVDMEDLGFNSFWRKGDSKEVKLSSLPLYNHSDEICTFPEFLKNETRSTLLLDSRRYSWYSPVSIEELQRLLGFVEDGNGSRVKVVVGNTGMGYYKEVESYDKYIDLRHIPEFSMIRRDNTGISIGATVTISKAIEALREYNQSGFYSEGDMVYKNIADHMEKVASGFIRNSASLGGNLVMAQRNHFPSDIATVLLAVGSTVNIMNSLKSEELTLEEFLRRPELDSKSILVGVKIPDRDRIMGISSGTKMKLLFETYRAAPRPLGNALPYLNAALMAKVSRCTTSNGIIVSNCRFAFGGYGTKHPIRATKVEEFLTGKVLSVGVLCEAVKLLKGIVVPDDGTSSPAYRSSLAVSFLFEFFSHLVEANAKSPDGCVDGYSTLLSPAKQLDHGKISTLLSSAKQEVELNRQYHPVGEPIAKSGAAIQASGEAVYVDDIPSPTNCLHGAFIYSTKPLARVKGIKLNPKSVADGVSALISFKDIPGENIGCKTIFGTEPLFADDFTRCAGEYIAFVVADTQKHANMAANLAVVDYDMENLEPPILSVEEAVRRSSFFEVPSFISPKQVGDFSRGMAKADHKILSAEIRLGSQYYFYMETQTALAIPDEDNCIVVYSSIQCPENAHTTISRCLGIPEHNVRVITRRVGGGFGGKSMKAIAVATACALAAYKLQRPVRIYMNRKTDMKIAGGRHPMKVTYSVGFKSNGKITALHVDILINAGIGVDISPIMPMLMVGALKKYDWGAFSFDIKVCKTNHLSKSAMRAPGEVQATFISEAVIEHVASTLSMDVDSVRSRNLHTFNSLNFFFEGCAGEHVEYTLPLIWDKLATSSSFKERTDMIKQFNMCNKWQKRGISRVPIVHEVSLKATPGKVSILSDGSVAVEVGGIELGQGLWTKVKQMTAFALISIGCDGMGDFLEKVRVIQSDTLSLIQGGLTAGSTTSECSCEAIRLCCNMLVERLNPIKERLQEQMGSVEWGTLILQAQSQAVNLSASSYYVPDFSSFQYLNYGAAVSEVEVNLLTGQTTILQSDIIYDCGQSLNPAVDLGQIEGAFVQGIGFFMLEEYTTNSDGLVVTEGTWTYKIPTIDTVPKQFNVEVLNSGHHKNRVLSSKASGEPPLLLAVSVHCATRAAIREARQQLLSWTGLTNLGGDDDMYLCMLKAKYHTWEEFLYKSLIPTFFFLFSLVCFYLFVDSLDDAYMSCGY* 1381
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 27560395 27577010 - Vvi18g1687 Vvi18g1687 781390

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1687 1380 Gene3D Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead 578 717 - -
Vvi18g1687 1380 Pfam Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain 610 716 IPR000674 -
Vvi18g1687 1380 Pfam CO dehydrogenase flavoprotein C-terminal domain 439 545 IPR005107 -
Vvi18g1687 1380 CDD fer2 12 92 IPR001041 GO:0051536
Vvi18g1687 1380 Pfam Molybdopterin cofactor-binding domain 746 976 IPR008274 GO:0016491
Vvi18g1687 1380 Pfam FAD binding domain in molybdopterin dehydrogenase 239 420 IPR002346 GO:0016491
Vvi18g1687 1380 PIRSF Xanthine_dh 4 1325 IPR016208 GO:0005506|GO:0016491
Vvi18g1687 1380 Gene3D Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding domain 773 867 - -
Vvi18g1687 1380 Gene3D - 294 420 IPR016169 -
Vvi18g1687 1380 PANTHER XANTHINE DEHYDROGENASE 7 1328 IPR016208 GO:0005506|GO:0016491
Vvi18g1687 1380 SUPERFAMILY Molybdenum cofactor-binding domain 721 1314 IPR037165 GO:0016491
Vvi18g1687 1380 SUPERFAMILY CO dehydrogenase ISP C-domain like 105 222 IPR036884 -
Vvi18g1687 1380 ProSiteProfiles 2Fe-2S ferredoxin-type iron-sulfur binding domain profile. 10 97 IPR001041 GO:0051536
Vvi18g1687 1380 SUPERFAMILY CO dehydrogenase flavoprotein C-terminal domain-like 436 547 IPR036683 -
Vvi18g1687 1380 SMART Ald_Xan_dh_C_2 610 718 IPR000674 -
Vvi18g1687 1380 Pfam 2Fe-2S iron-sulfur cluster binding domain 15 81 IPR001041 GO:0051536
Vvi18g1687 1380 Gene3D Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding domain 1008 1316 - -
Vvi18g1687 1380 Pfam Molybdopterin cofactor-binding domain 1005 1267 IPR046867 -
Vvi18g1687 1380 SUPERFAMILY 2Fe-2S ferredoxin-like 11 98 IPR036010 GO:0051536
Vvi18g1687 1380 ProSitePatterns 2Fe-2S ferredoxin-type iron-sulfur binding region signature. 49 57 IPR006058 GO:0051537
Vvi18g1687 1380 Gene3D - 7 96 IPR012675 -
Vvi18g1687 1380 PANTHER INDOLE-3-ACETALDEHYDE OXIDASE-LIKE 7 1328 - -
Vvi18g1687 1380 Gene3D - 97 207 - -
Vvi18g1687 1380 Gene3D - 208 293 IPR016167 -
Vvi18g1687 1380 SUPERFAMILY CO dehydrogenase molybdoprotein N-domain-like 575 715 IPR036856 -
Vvi18g1687 1380 Gene3D Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding domain 747 977 - -
Vvi18g1687 1380 Pfam [2Fe-2S] binding domain 93 178 IPR002888 GO:0016491|GO:0046872
Vvi18g1687 1380 Gene3D Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding domain 1045 1181 - -
Vvi18g1687 1380 Gene3D - 433 550 - -
Vvi18g1687 1380 ProSiteProfiles PCMH-type FAD-binding domain profile. 235 423 IPR016166 GO:0071949
Vvi18g1687 1380 SUPERFAMILY FAD-binding/transporter-associated domain-like 203 419 IPR036318 GO:0050660
Vvi18g1687 1380 SMART CO_deh_flav_C_2 438 546 IPR005107 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1687 K09842 AAO3; abscisic-aldehyde oxidase [EC:1.2.3.14] K11817 vvi:100255199 2628.2
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1687 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002077 2 2 1 1 1 4 0 2 2 2 1 2 5 2 1 5 2 1 3 2 2 2 2 2 1 2 2 3 4 4 65