Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1689 ATGGGAAGGTTGCTTTCCTTTGCTTTATATGGAGTATTTAACACAGTAGTCTACAAAAGCTTAAACGTTAAGACATCTGTGGAAAATCCTGTCATTGACGGATCTTTTTCCTATTTTTTTAGGTTCCTGCCAACCTGGTGCTCTCTCGAACAAGGGTTTACAAGGTTTTGTTTCTGTGATCTCCTACAAGCCATGGATTGTATAAACCCAATCCTTGATGTTGCCATCACTGCCACACGTGCAGCTCATGGCACCGGTCTGCCAGAAACCCTTGAATATTTGAGAGACGCCATGGTGATCCTGAAGCACAAGGCTAATGATGTGAAGGCCGCGGTGGATTATGCTGAGGAAAACCGCAAGATGCGACGGACACATGAAGTGAGTAACTGGCTCCTCAGTGTAGAAGTCTTGGAAAAGGAAGTGATGGAGATACTGCAGAAGGGTGATCGGGAAATCCAGCAGAAATGCCTCGGAACCCGCTTTCCCAAGAATTACCGGTCAAGCTACAAGATCGAGAAGATAGCAAGTGAAACGATTGGTGTTGTCACTGAACTGAGGCACAGAGGCGATTTCAGCATTGTGGTTATTAGGCTGCCTAGAGCTGATGTGGATGAGCGGCCAATGGAGAAGACTGTGGGCTTGGATCGGATGTATGCAGAGGTTTGCAGATGCATCCAAGATGAAGAACCGGGAATTATTGGATTGTATGGTATGGGGGGTACCGGGAAAACTACCCTCATGACCAAAGTGAATAATGAGTTCTTATGCATTCATGACTTTGAAGTAGTCATCTGGGTTGTAGTATCCAGGCCAGCAACTGTGGGAAAAGTACAAGAAGTTATTCGCAACAAGTTAGACATCCCGGATGATAGATGGGGAAACAGAACTGAGGACGAAAAAGCAGTAGAAATTTTCAAAATCTTGAAGGCAAAAAGGTTTGTGATGCTGCTAGATGATGTATGGGAGCGTCTTGATCTCAAAAAAGTGGGGATTCCTTCACCCAATTCCCAAAACAGGTCCAAAGTAATATTAACAACCCGCTCTCGGGATGTTTGTCGGGATATGGAAGCTCAACAAATCCTTGAGATGGAGCGTTTGACACAAGATGATGCCATTAATTTGTTCATGGAGAAGGTTGGAAAGACTACTCTAAATTCACATCCGGATATACCCCAACTCGCTGAAATTGCTGCTAAAGAATGCCAAGGCTTACCACTTGCACTTGTTACTATTGGGCGAGCTATGGCTGGCAAGAACTCTCCACAAGAATGGGAGCCAGCAATACGAATGTTGAAGACTTATTCATCAAAGTTTTCAGCTTCCACGGCGGCTCCTTTTGCTTCTTCTCAATGGAGTTATGATGTGTTCCTTAGTTTTAGAGGAGAAGACACCCGCTTTACCTTTGCCGCTCATCTCTATGTAGCCTTGCACAGGAGAGGAGTCAACACTTTCTTTGATGACCACAAAATTAGGAGAGGCGAATCCATATCTCCAACACTCGTAAAAGCAATTGAAGGATCAAGGTCTTCTATCATACTTCTCTCTCAAAACTATGCCGGTTCAAGTTGGTGCTTAGAGGAACTAGTCAAGATACTGGAATGCAGGAAAACCATGGGACAACTGGTTCTGCCCATTTTCTACAATGTGGATCCATCAGATGTGCGAAGACACAAAGGGAGCTTTGGAGAGGCCTTGGTTAAGCATGAAAATACTTTGAAGCATGATATAGACAAGGTGAAGAATTGGAGGGAGGCCCTTAGTGAAGTTGCCAATTTAGCTGGCTGGAATTCACAGAATAAGTCTGAGCCTACGTTTCTCAAGGAAATCGTCATTGATGTTTTGAAAAGAGTGTTTGGATTATCGGCAGGTGATGCTAAGGCAATAGTAAAAGAAGATTCCCGTATACAAAACAAGGAAGTGGTACCAGGTCCACACTCAACCACTGTTCACATTGCAGGACAGTCTGGCATAAGTGCTAGAGGTAGGAGACCACCCATTGAAAATGTTGGGGAAGAATTAATTGACTCAGACTCAGACTCAGGATATGATGACGTGGAATCCATATTAACAAAAGTATGGACAAATTTATGA 2091 43.95 MGRLLSFALYGVFNTVVYKSLNVKTSVENPVIDGSFSYFFRFLPTWCSLEQGFTRFCFCDLLQAMDCINPILDVAITATRAAHGTGLPETLEYLRDAMVILKHKANDVKAAVDYAEENRKMRRTHEVSNWLLSVEVLEKEVMEILQKGDREIQQKCLGTRFPKNYRSSYKIEKIASETIGVVTELRHRGDFSIVVIRLPRADVDERPMEKTVGLDRMYAEVCRCIQDEEPGIIGLYGMGGTGKTTLMTKVNNEFLCIHDFEVVIWVVVSRPATVGKVQEVIRNKLDIPDDRWGNRTEDEKAVEIFKILKAKRFVMLLDDVWERLDLKKVGIPSPNSQNRSKVILTTRSRDVCRDMEAQQILEMERLTQDDAINLFMEKVGKTTLNSHPDIPQLAEIAAKECQGLPLALVTIGRAMAGKNSPQEWEPAIRMLKTYSSKFSASTAAPFASSQWSYDVFLSFRGEDTRFTFAAHLYVALHRRGVNTFFDDHKIRRGESISPTLVKAIEGSRSSIILLSQNYAGSSWCLEELVKILECRKTMGQLVLPIFYNVDPSDVRRHKGSFGEALVKHENTLKHDIDKVKNWREALSEVANLAGWNSQNKSEPTFLKEIVIDVLKRVFGLSAGDAKAIVKEDSRIQNKEVVPGPHSTTVHIAGQSGISARGRRPPIENVGEELIDSDSDSGYDDVESILTKVWTNL* 697
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 27602437 27608757 + Vvi18g1689 Vvi18g1689 781392

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1689 696 PANTHER TMV RESISTANCE PROTEIN N-LIKE 421 604 - -
Vvi18g1689 696 PANTHER TOLL/INTERLEUKIN-LIKE RECEPTOR-PROTEIN 421 604 - -
Vvi18g1689 696 Gene3D - 365 447 IPR042197 -
Vvi18g1689 696 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 207 435 IPR027417 -
Vvi18g1689 696 PRINTS Disease resistance protein signature 232 247 - -
Vvi18g1689 696 PRINTS Disease resistance protein signature 307 321 - -
Vvi18g1689 696 PRINTS Disease resistance protein signature 401 415 - -
Vvi18g1689 696 ProSiteProfiles TIR domain profile. 451 617 IPR000157 GO:0007165
Vvi18g1689 696 Gene3D - 196 363 IPR027417 -
Vvi18g1689 696 Pfam TIR domain 453 614 IPR000157 GO:0007165
Vvi18g1689 696 SMART till_3 452 592 IPR000157 GO:0007165
Vvi18g1689 696 SMART AAA_5 229 367 IPR003593 -
Vvi18g1689 696 SUPERFAMILY Toll/Interleukin receptor TIR domain 446 595 IPR035897 -
Vvi18g1689 696 Pfam NB-ARC domain 227 453 IPR002182 GO:0043531
Vvi18g1689 696 Gene3D - 448 619 IPR035897 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1689 - - K13459 vvi:100265494 1226.85
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1689 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003778 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 34 34