Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1691 ATGAAAGCATTGAAAGCCTCTCTCTTCCTCCTCGCCCTCCGGTGCCTCACCGTGGCATCCGCCGCCTGGCATGTGGACGATGAATCGGGTCTCCTCGCCTTCAAATCGGCCATCACCCATGACCCCTCAGGCATGCTTCAAGACTGGAAACCCGGCACGGACTGCTGCAAATGGTCCGGTATGGACTGCCTGGGTGAAAACCGGGTCATGACTCTCTCCCTCACTGGCCAACCCGGAGAACGGGATAGCTTCTTGTTCGGTACAATCTCGCCTTCTCTCGGCAAAGTGCAAAACCTGGTTGGAATTTACCTGCTGAACCTCCGAAACATCTCGGGCCCTTTCCGGATCTTTTTTTTCAGGATGTCGAAACCTCAATACGTTTACATCGAATACAACCGGCTTTCCGGCCTGATCCCCCGAAATATCGGAAACTTGGCTCGATTCAGTGCGATGAGCCTAGAGGGAAATCGGTTCACCGGGCCAATACCGAGTTCAATCTCCCAGCTTACTGGAACTTGTCCCTTCTCAGCGTCGATCGGAACCAGCTCTCCGCCGTACAATCACTTCCATCTCGGTGCCATTCCAAAATGGGTCACATCGTCAGAGATCATCTATTCACCGAAGCTCGCAAAATGCGGACTCAAATTCAAATTAGACGATTGGAAGCCGTTGGAAACCTATTTCTACGACTACATTGATCTCTCGGAAAATAAAATCATCGGTAGTCCGATCCGGCTGTTAAACAAAACGGATTACCTAGTAGGGTTTTGGACCCCCGGCAACCAACTGCGATTCAATATGTCGAAATCGAGAATCGTGAAGACGCTGAACTACATAGATATGTCGCGGAACATGGTTTTCGGGAAGGTGCCTGAGGCGATATCGGGGCTGGAGAAGCTGAATGTGAGTCACAACCATTTGTGTGCTCGGATTCCGCCGTCGAAATTTCCGGCAAGCGCGTTCCAGGGCAACGACTGCCTGATGAATTGCCTCACCGCCGCCTCCGCTGCCTGCCATGTGGACGACGAATTGGGTCTCCTCGCCTTCAAATCGGCCATCACCCATGACCCCTCCGGCATGCTTCAAAACTGGAAGTCCGGCACGGACTGCTGCAAATGGCCAGGTATCACCTGCCTGTCTGGAAACCGGGTCACGAGTCTCTCCCTCACGGGCCAACCTGGTAAACAGAATAGCTTTTTGTCCGGTACAATCTCGCCTTCTCTGGTGAAAGTGCAGAACTTGGATGGAATTTACCTGCAGAACCTCCGAAACATCACGGGTCCTTTTCCGGCTCTTCTTTTTGGGATGCCGAAACTCCTGTTCGTTTACATCGAAAACAACCAGCTTTCTGGCCCACTTCGCCGAGATATCGGAAACTTGACCCAACTCAATGCGCTGAGTTTTGAGGGTAACCGGTTCAGCGGGCCAATACCGAGTTCGATCTCCCAGCTGACTGGCCGGCTCAAGGACTTGACCTTTCTCAGCCTCGAACGGAACGGGCTCTCCGGCAGCATACCGGACTTCTTCTCCTCGTTCTCTAACCTCCGGATTCTCCGACTTTCTCACAATAAGTTTTCCGGGAAAATTCCGAACAGCATTTCAAGCTTATCTCCAAAATTGGCCTATTTGGAGGTGGGCCACAACTCCCTAGTGGGACAGATCCCAGATTTTCTCGGTAACTTTACAGCATTGGATACCCTTGATCTTTCCTGGAACCAATTCTCCGGCACTGTGCCAAAAACTTTCGCAAAGCTCACAAAAATATTCAACCTCGATCTGTCACACAATTTTCTCGTCGATCCCTTCCCAGAAATGTCCGTAAAAGGGATCGAATCACTCGATCTATCGTACAATCATTTCCATCTCGGTACAATTCCAAAATGGGTCACATCATCTGAGATCATCTACTCACTGAAGCTCGCAAAATGCGGACTCAAGTTCAAACTAGACGATTGGAAGCCGTCGGAAACCTATTTCTACGACTACATCGATCTCTCGGAAAACGAAATCACAGGTAGTCCGACCCAGTTGTTGAACAAAACCGATTACCTGGTAGGGTTTTGGGCCTCCGGCAACCAGCTGCGATTCGATTTCTCGAAACTGAGAATCGTGAAGACGCTGAAGTACTTGGATGTGTCGCGGAGCATGGTTTTCGGGAAGGTGCCTGAGGGGATAACGGGGTTGGAGAAGCTGAATGTGAGCCACAACCATTTGTGTGGTCGGCTTCCTCCGTCGAAGTTTCCAGCGAGTGCGTTCCAGGGCAATGACTGCCTGTGCGGGTCGCCGCTTTCGGCTTGCAAAAGGATTTTGAAGCCATCAGAAATGTTGTGTTGTTTGTTTGTTGCAGTAATGCTATGA 2358 50.85 MKALKASLFLLALRCLTVASAAWHVDDESGLLAFKSAITHDPSGMLQDWKPGTDCCKWSGMDCLGENRVMTLSLTGQPGERDSFLFGTISPSLGKVQNLVGIYLLNLRNISGPFRIFFFRMSKPQYVYIEYNRLSGLIPRNIGNLARFSAMSLEGNRFTGPIPSSISQLTGTCPFSASIGTSSPPYNHFHLGAIPKWVTSSEIIYSPKLAKCGLKFKLDDWKPLETYFYDYIDLSENKIIGSPIRLLNKTDYLVGFWTPGNQLRFNMSKSRIVKTLNYIDMSRNMVFGKVPEAISGLEKLNVSHNHLCARIPPSKFPASAFQGNDCLMNCLTAASAACHVDDELGLLAFKSAITHDPSGMLQNWKSGTDCCKWPGITCLSGNRVTSLSLTGQPGKQNSFLSGTISPSLVKVQNLDGIYLQNLRNITGPFPALLFGMPKLLFVYIENNQLSGPLRRDIGNLTQLNALSFEGNRFSGPIPSSISQLTGRLKDLTFLSLERNGLSGSIPDFFSSFSNLRILRLSHNKFSGKIPNSISSLSPKLAYLEVGHNSLVGQIPDFLGNFTALDTLDLSWNQFSGTVPKTFAKLTKIFNLDLSHNFLVDPFPEMSVKGIESLDLSYNHFHLGTIPKWVTSSEIIYSLKLAKCGLKFKLDDWKPSETYFYDYIDLSENEITGSPTQLLNKTDYLVGFWASGNQLRFDFSKLRIVKTLKYLDVSRSMVFGKVPEGITGLEKLNVSHNHLCGRLPPSKFPASAFQGNDCLCGSPLSACKRILKPSEMLCCLFVAVML* 786
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 27667978 27672909 - Vvi18g1691 Vvi18g1691 781394

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1691 785 Gene3D Ribonuclease Inhibitor 24 334 IPR032675 -
Vvi18g1691 785 SUPERFAMILY L domain-like 369 725 - -
Vvi18g1691 785 Pfam Leucine Rich Repeat 514 536 IPR001611 GO:0005515
Vvi18g1691 785 Pfam Leucine rich repeat N-terminal domain 341 378 IPR013210 -
Vvi18g1691 785 Pfam Leucine rich repeat N-terminal domain 26 63 IPR013210 -
Vvi18g1691 785 PANTHER LEUCINE-RICH REPEAT (LRR) FAMILY PROTEIN 332 767 - -
Vvi18g1691 785 PANTHER LEUCINE-RICH REPEAT (LRR) FAMILY PROTEIN 185 328 - -
Vvi18g1691 785 PANTHER LEUCINE-RICH REPEAT (LRR) FAMILY PROTEIN 8 170 - -
Vvi18g1691 785 SUPERFAMILY L domain-like 23 315 - -
Vvi18g1691 785 SMART LRR_typ_2 725 754 IPR003591 -
Vvi18g1691 785 SMART LRR_typ_2 561 584 IPR003591 -
Vvi18g1691 785 SMART LRR_typ_2 512 536 IPR003591 -
Vvi18g1691 785 SMART LRR_typ_2 488 511 IPR003591 -
Vvi18g1691 785 SMART LRR_typ_2 294 323 IPR003591 -
Vvi18g1691 785 Gene3D Ribonuclease Inhibitor 340 485 IPR032675 -
Vvi18g1691 785 Gene3D Ribonuclease Inhibitor 486 769 IPR032675 -
Vvi18g1691 785 PANTHER RECEPTOR-LIKE PROTEIN 12 ISOFORM X1 8 170 IPR045273 -
Vvi18g1691 785 PANTHER RECEPTOR-LIKE PROTEIN 12 ISOFORM X1 332 767 IPR045273 -
Vvi18g1691 785 PANTHER RECEPTOR-LIKE PROTEIN 12 ISOFORM X1 185 328 IPR045273 -
Vvi18g1691 785 Pfam Leucine rich repeat 538 596 IPR001611 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1691 - - - vvi:100261979 882.863
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1691 . . . . . . . . . . . . . . Sed05g2505 . . Bhi04g02557 Tan11g0037 Cmetu03g0795 . Hepe02g3470 . Lcy10g2364 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cla11g00803 Cam11g0839 Cec11g0825 . Clacu11g1018 Cmu11g0881 Cre11g1284 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012402 1 1 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 2 0 1 1 1 1 1 1 1 1 0 1 1 26