Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1693 ATGGCCCTCAACATGAAAACCCTTACCCAAGCCCTAGCCAAAACCGCTGCAGTGATCGAGAAGACGGTTCAGACCACTGTCCAGGAGGTCACCGGACCCAAGCCCCTTCAGGACTACGAACTCCTTGACCAGATCGGCACCGCCGGCCCGGGACTGGCCTGGAAGCTCTACTCCGGCAAGGCCAGGGGTGGATCCGCCGTGTCGCAGCAGTACCCCACGGTGTGCGTGTGGGTTTTGGACAAGAAGGCTCTGTCCGAGGCGAGGACGCGGGCGGGGCTGTCGCGGGCGGCCGAGGAGTCGTTTTTGGATGTGATTAGGGCGGATGCGGGGAGGTTGGTGAGGCTGCGACACCCGGGGGTGGTGCACGTGGTGCAGGCGCTGGATGAGAACAAGAATGCAATGGCGATGGTGACGGAGCCGTTGTTTGCGTCTGTGGCGAATGCGCTGGGGAGTTTGGAGGGGATTGGGAAGGTGCCTAAGGAGCTTAAGGGGATGGAAATGGGATTGTTGGAGGTGAAGCATGGTCTGCTCCAGGTTTCAGAAACCTTGGAATTTCTTCATAACAATGCTCGTCTTATTCATCGGGCTATATCACCTGAGACTGTCGTCATTACTTCAAGTGGAGCTTGGAAACTCAGTGGATTTGGCTTTGCAATTTCTTCAGATCAGGCATCGGGTGATTTAGCTAATGTGCCAGCCTTCCATTATGCTGAATATGATGTTGAGGATTCAATACTGCCCCTTCAGCCAGCACTGAATTACACTGCTCCTGAACTGGTTCGGAGTAGAGGATCTCCAGCTGGATCTGCTTCTGATATTTTCAGTTTTGGATGCCTTGCCTACCACTTGATTGCTCACAAGCCTTTGTTTGACTGCCACAACAATGTGAAGATGTACACGAATAGTTTGACTTATTTAACCAATGAAGCTTTCACATCTATTCCCCCAGAGTTGGTTCCTGATTTGCAAAGAATGCTTTCTACAAATGAGTCTTTTAGGCCAACAGCTTTGGAATTTACAGGTTCTCCATTTTTTCGAGATGACACTAGGTTGCGTGCTCTTCGCTTCTTGGACCACATGCTTGAAAGGGATAACATGCAGAAGTCTGAGTTTCTAAAAGCATTATCGGATATGTGGAAAGATTTTGACTCTCGTGTTTTGCGTTATAAGGTGCTTCCACCTCTTTGTGCAGAACTTCGAAATTTGGTGATGCAACCAATGATTCTTCCCATGGTTCTCACAATAGCGGAGTCTCAGGATAAAAATGAGTTTGAGTTATATACTCTGCCAGCTCTTGTTCCTGTCCTGAGTACTGCTTCAGGTGAGACACTATTGCTGCTTGTGAAGCATGCAGAGCTTATCATCAACAAGACTAGTCATGAGCATTTAGTATCACATGTCCTGCCTTTGCTTGTTCGAGCTTATGATGATAACGATGCTCGCATACAAGAGGAAGTGTTGAGGAGATCTGCGTTCCTTGCCAAGCAACTTGATGCTCAGCTCGTAAAACAAGCTATCTTGCCTCGTGTTCATGGATTGGCTCTTAAAACCACTGTTGCTGCAGTGAGAGTGAATGCTTTGCTATGCTTAAGTGACTTGGTTAGCACACTTGACAAACATGCTGTTCTAGATGTCTTGCAAACAGTCCAACGTTGTACCGCAGTTGACCGTTCTCCTCCAACATTAATGTGTACGCTTGGGATTGCAAACTCAATTCTTAAGCAGTATGGTATAGAATTTGCTGCTGAGCATGTCCTTCCACTACTCACACCTCTTCTCATTGCTCAACAATTGAATGTTCAACAGTTTGCAAAGTACATGCTCTTTGTTAAGGATATCCTCAGGAAGATTGAAGAAAAACGAGGGGTTACCTTAACTGATTCTGGAATGCCACAAGTAAAAACACCTTCTTTTTCTGATGGGCTTCAGTCTGAGGCATTGAAAAAAGTAAGTGGAACAGTCTCTTCTGCAGCAAAAAGCAGCACATCATGGGATGAAGATTGGGGTCCCACAACAAAGGCACCTGCTAATTCTATTCAACCCTCTACGATCTCTATCTCATCCACTCTTCCTTACCCGAGTAATCAGCCAATTGAAGTTGCTTCTATGCAACCACGTTCTTCTTTGACTTCTGCATCAAGTCAGCACACAGCTTCGACATGCCCCCCAGTCGATATTGAGTGGCCGCCTCGGGCATCATCAGGTATGACTCCCAAACTAGGAGATGCTGCGAATCAAAAGCCTAACACAGGGTCTCCATCTACTTCAACTTTTGATGATATAGACCCTTTTGCTGATTGGCCACCGCGACCTGGTGGTTCCTTAAATGTTTCTGGATCTTCCAACAATGGCATAGTGGCATCATCCAACAACAAATATGGGACCACTTCAAGGTCAGGTGCGATGAATGATGTCATCTTCCAAACCAACAGTGATATGAGTTGGGCCTTCAACACCCAGAAATTGGTGGAGCCATCAAGGCAGAACCAGGGGAATTCGACCTTCAATAGTACTAGTTTAAACAGTGGACTCAACTCCCAGAGCTCTATTGGGTTCATGAAACAGAATCAAGGGATTTCAACTTTGGGTTCGTATAATGACAAGAAAACAACAGATCTGGGGTCCATATTTGCTTCTAGCAAGAACGATCATGCTGCACCTAGACTTGCTCCTCCCCCACCAACTGCTGTGGGAAGAGGAAGAGGGAGGGGGAGGGGAAATCAAGGTCATTCAAATGCTAGGCCTGCTCATGCCAAATCACCATCTGAACAGCCGCCCCTTTTGGATTTGCTGTAA 2796 47.35 MALNMKTLTQALAKTAAVIEKTVQTTVQEVTGPKPLQDYELLDQIGTAGPGLAWKLYSGKARGGSAVSQQYPTVCVWVLDKKALSEARTRAGLSRAAEESFLDVIRADAGRLVRLRHPGVVHVVQALDENKNAMAMVTEPLFASVANALGSLEGIGKVPKELKGMEMGLLEVKHGLLQVSETLEFLHNNARLIHRAISPETVVITSSGAWKLSGFGFAISSDQASGDLANVPAFHYAEYDVEDSILPLQPALNYTAPELVRSRGSPAGSASDIFSFGCLAYHLIAHKPLFDCHNNVKMYTNSLTYLTNEAFTSIPPELVPDLQRMLSTNESFRPTALEFTGSPFFRDDTRLRALRFLDHMLERDNMQKSEFLKALSDMWKDFDSRVLRYKVLPPLCAELRNLVMQPMILPMVLTIAESQDKNEFELYTLPALVPVLSTASGETLLLLVKHAELIINKTSHEHLVSHVLPLLVRAYDDNDARIQEEVLRRSAFLAKQLDAQLVKQAILPRVHGLALKTTVAAVRVNALLCLSDLVSTLDKHAVLDVLQTVQRCTAVDRSPPTLMCTLGIANSILKQYGIEFAAEHVLPLLTPLLIAQQLNVQQFAKYMLFVKDILRKIEEKRGVTLTDSGMPQVKTPSFSDGLQSEALKKVSGTVSSAAKSSTSWDEDWGPTTKAPANSIQPSTISISSTLPYPSNQPIEVASMQPRSSLTSASSQHTASTCPPVDIEWPPRASSGMTPKLGDAANQKPNTGSPSTSTFDDIDPFADWPPRPGGSLNVSGSSNNGIVASSNNKYGTTSRSGAMNDVIFQTNSDMSWAFNTQKLVEPSRQNQGNSTFNSTSLNSGLNSQSSIGFMKQNQGISTLGSYNDKKTTDLGSIFASSKNDHAAPRLAPPPPTAVGRGRGRGRGNQGHSNARPAHAKSPSEQPPLLDLL* 932
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 27682644 27701721 + Vvi18g1693 Vvi18g1693 781396

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1693 931 Gene3D - 349 622 IPR011989 -
Vvi18g1693 931 SUPERFAMILY ARM repeat 347 605 IPR016024 -
Vvi18g1693 931 MobiDBLite consensus disorder prediction 739 757 - -
Vvi18g1693 931 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 7 931 - -
Vvi18g1693 931 MobiDBLite consensus disorder prediction 824 843 - -
Vvi18g1693 931 MobiDBLite consensus disorder prediction 880 931 - -
Vvi18g1693 931 CDD PK_SCY1_like 45 347 - -
Vvi18g1693 931 SMART serkin_6 39 345 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi18g1693 931 PANTHER SCY1-RELATED S/T PROTEIN KINASE-LIKE 7 931 - -
Vvi18g1693 931 MobiDBLite consensus disorder prediction 705 721 - -
Vvi18g1693 931 Gene3D Phosphorylase Kinase; domain 1 37 139 - -
Vvi18g1693 931 ProSiteProfiles Protein kinase domain profile. 39 345 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi18g1693 931 Pfam Protein kinase domain 109 345 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi18g1693 931 MobiDBLite consensus disorder prediction 705 757 - -
Vvi18g1693 931 Gene3D Transferase(Phosphotransferase) domain 1 156 348 - -
Vvi18g1693 931 SUPERFAMILY Protein kinase-like (PK-like) 34 349 IPR011009 -
Vvi18g1693 931 MobiDBLite consensus disorder prediction 658 679 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1693 K17541 SCYL2; SCY1-like protein 2 - vvi:100256813 1759.96
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1693 Blo01g01678 . . . Bpe02g00263 . . Bma01g02446 . . Cma01g00863 Cma09g01302 Car01g00792 . . Cpe06g00982 . . . . . . . . Cla08g00080 Cam08g0077 Cec08g0174 Cco08g0134 Clacu08g0090 Cmu08g0089 Cre08g0078 Cone4ag1158 . . . . . . Cme09g00077 . . Bda11g00925 . . . . . . Cmo01g00908 . . . . Car09g01114 . Cpe02g00993 . . . . . . . . . . . . . . Lsi08g00097 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006310 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 2 3 1 1 1 1 38
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76366 PF00069 Pkinase 1.10E-19 CL0016 Vvi PK