Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1694 ATGTCTTACAATCTGATTATGAGCCATCGTGCCTCTGAATTTGATACCTTATGTTTGCGAGAGTGCAAAAACCTTGAGAGTCTGCCAACAAGCATTTGGGAGTTCAAATCCCTTAAATCTCTCTTTTGCTCTCACTGTTCACAATTACAATACTTTCCAGAAGTCTTGGAGAATATAGAAAACTTAAGGGAGCTTCACTTGAATGAAACGGCTATAAAAGAGCTACCATCATCAATCGAACATTTGAATAGGCTTGAAGTTTTGAATCTGGATGGCTGCAAAAACCTTGTGACTCTTCCAGAAAGCATTTCTAATTTATGCTTTCTTGAAGTTCTCGATGTCAGTTACTGTTCAAAACTCCACAAATTGCCACAAAACCTGGGGAGGCTGCAAAGCTTGAAGCATCTCCATGCTTGTGGCTTAAATTCAACATGTTGCCAATTGCTTTCTTTGTCAGGTTTATGCTCCTTAGAGAAGTTAATTCTACATGGGTCAAAGCTAATGCAAGGAGAAATCCTGAGTGATATTTGCTGCTTGTACTCGTTGAAAGCGTTAGATCTATCTTTCTGCAGTATAGATGAAGGAGGAATCCCCACCGAAATTTGCCACCTATCGTCTCTGCGACAATTACTGCTATTCGGGAATCTTTTTAGGAGCATACCTGCTGGGGTCAATCAACTTTCTATGCTGAGACTCCTTGACTTGGGTCACTGTCAAGAGCTTCGACAAATTCCAGCGCTTCCATCCAGTTTGCGTGTCTTAGATGTACATGAGTGCACACGGCTGGAAACTTCTTCAGGTCTACTCTGGTCTTCTCTATTCAACTGCTTCAAATCAGTGATTCAGGATTTTGAATGCAAGATTTATCCTAGAGAAAAACGTTTTACCCGAGTAAATCTTATTATTTCAGTAAGTTGTGGAATGCCAAAATGGATAAGCCATCACAAAAAGGGAGCTAAAGTAGTAGCAAAGCTTCCTCAAAATTGGTATAAAAATAACGACTTGTTGGGTTTTGTTTTGTACTCTCTCTATGATCCACTTGATAATGAATCTGAGGAGACACTGGAGAATGATGCAACTTACTTCAAGTATGGTTTGACTTTGCGTGGTCATAAAATTCAGTTTGTGGATGAACTCCAGTTTTATCCCTCGTGTCAATGCTATGATGTTGTACCAAAAATGTGGATGACTTATTATCCGAAGGTGGAGATTGTGAAGAAGTACCCCTCAAATAAATGGAGGCAGTTGACAGCTTCATTTTGTGGCTTCTCACGTGGTAAAGCAATGAAAGTGGAAGAGTGTGGGATCCATCTTATATATGCCCATGATCATGAAAAGAACAATGGTAAAGCAATGATACCCACCATTTGCCGGGAATGTCAAGAAGATGTGCAATCCCGACGGAAGCTTTGTTTAAAGGGAAATGCCATCAATGAACTACCCACTATTGAGTGTCCCTTAGAACTTGATAGCTTATGTTTGCGAGAATGCAAAAACCTTGAGCGTCTTCCCAGTAGCATATGTGAGTTTAAATCCCTTACAACTCTCTTCTGCTCAGGATGTTCAGGATTAAGGAGCTTTCCGGAAATCCTTGAGGATGTGGAAAATTTAAGAGAGCTTCATTTAGATGGAACTGCTATAGAAGAACTACCAGCATCAATTCAATATTTAAGAGGGCTTCAATATTTGAATCTTTCAGATTGCACCGACCTTGTGAGTCTTCCAGAAAGCATTTGTAATTTGAGTTCTCTCAAAATTCTAAATGTCAGTTTCTGTACAAAACTTGAGAAATTTCCTGAGAACCTGAGGAGTTTGCAATGTTTAGAGGATTTGTCCGCTTCAGGTCTAAATCTAGGCATGGACTGTTTTAGTAGCATACTTGCAGGCATCATTCAACTTTCTAAACTGAGAGTCCTTGACTTGAGTCACTGCCAGGGGCTTCTACAAGCTCCCGAGCTTCCGCCAAGTTTACGATATCTAGATGTCCACAGTTTGACATGCTTGGAAACTTTATCAAGTCCATCAAGTCTACTTGGTGTTTTTCTGTTCAAATGCTTTAAATCAACAATTGAGGAATTTGAATGCGGCTCCTATTGGGACAAAGCAATCAGAGTTGTTATTTCGGGAAATAATGGAATTCCAGAGTGGATAAGCCAGCAAAAAAAAGGATCTCAAATAACAATAGAGCTTCCTATGGATTGGTACAGAAAAGATGACTTCTTAGGATTTGCTTTATACTCTGCTTTTATTCCTATGGCTTGTGATGGGTTGAATTGCGAACTCAATATCTGTGGTGATCAATCTGAATGCTGTCACGTGGATGATGTCCGGTTTTATTGCTGCGAAATTTGTGGTGAATCAAGTCAAATGTGTGTGACTTATTATCCCAAGGTGGCTATTGACAACCAGTATTGGTCAAACGAATGGAGACGTTTGAAGGCTTCATTTCGTAGCTTTGACGGTACACCAGTCGAAGTGAAAGAGTGGGGGTTCCATCTTATATGTACAGAGTACAATGATGAGCAGAGAAGTTGTGATACCAGATCAGCAGCAGAAGATACTAATTCTAATGCACAAACAAGCAATGACTACACAGTGCACTAA 2604 39.98 MSYNLIMSHRASEFDTLCLRECKNLESLPTSIWEFKSLKSLFCSHCSQLQYFPEVLENIENLRELHLNETAIKELPSSIEHLNRLEVLNLDGCKNLVTLPESISNLCFLEVLDVSYCSKLHKLPQNLGRLQSLKHLHACGLNSTCCQLLSLSGLCSLEKLILHGSKLMQGEILSDICCLYSLKALDLSFCSIDEGGIPTEICHLSSLRQLLLFGNLFRSIPAGVNQLSMLRLLDLGHCQELRQIPALPSSLRVLDVHECTRLETSSGLLWSSLFNCFKSVIQDFECKIYPREKRFTRVNLIISVSCGMPKWISHHKKGAKVVAKLPQNWYKNNDLLGFVLYSLYDPLDNESEETLENDATYFKYGLTLRGHKIQFVDELQFYPSCQCYDVVPKMWMTYYPKVEIVKKYPSNKWRQLTASFCGFSRGKAMKVEECGIHLIYAHDHEKNNGKAMIPTICRECQEDVQSRRKLCLKGNAINELPTIECPLELDSLCLRECKNLERLPSSICEFKSLTTLFCSGCSGLRSFPEILEDVENLRELHLDGTAIEELPASIQYLRGLQYLNLSDCTDLVSLPESICNLSSLKILNVSFCTKLEKFPENLRSLQCLEDLSASGLNLGMDCFSSILAGIIQLSKLRVLDLSHCQGLLQAPELPPSLRYLDVHSLTCLETLSSPSSLLGVFLFKCFKSTIEEFECGSYWDKAIRVVISGNNGIPEWISQQKKGSQITIELPMDWYRKDDFLGFALYSAFIPMACDGLNCELNICGDQSECCHVDDVRFYCCEICGESSQMCVTYYPKVAIDNQYWSNEWRRLKASFRSFDGTPVEVKEWGFHLICTEYNDEQRSCDTRSAAEDTNSNAQTSNDYTVH* 868
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 27705193 27721484 - Vvi18g1694 Vvi18g1694 781397

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1694 867 SUPERFAMILY L domain-like 21 621 - -
Vvi18g1694 867 MobiDBLite consensus disorder prediction 849 867 - -
Vvi18g1694 867 Gene3D Ribonuclease Inhibitor 7 145 IPR032675 -
Vvi18g1694 867 Gene3D Ribonuclease Inhibitor 402 682 IPR032675 -
Vvi18g1694 867 Gene3D Ribonuclease Inhibitor 146 285 IPR032675 -
Vvi18g1694 867 SMART LRR_typ_2 534 556 IPR003591 -
Vvi18g1694 867 SMART LRR_typ_2 557 581 IPR003591 -
Vvi18g1694 867 SMART LRR_typ_2 59 82 IPR003591 -
Vvi18g1694 867 SMART LRR_typ_2 106 130 IPR003591 -
Vvi18g1694 867 SMART LRR_typ_2 204 227 IPR003591 -
Vvi18g1694 867 PANTHER OS11G0677101 PROTEIN 11 160 - -
Vvi18g1694 867 PANTHER OS11G0677101 PROTEIN 630 834 - -
Vvi18g1694 867 PANTHER OS11G0677101 PROTEIN 168 637 - -
Vvi18g1694 867 MobiDBLite consensus disorder prediction 848 867 - -
Vvi18g1694 867 Pfam C-JID domain 308 444 IPR045344 -
Vvi18g1694 867 Pfam C-JID domain 711 838 IPR045344 -
Vvi18g1694 867 PANTHER LEUCINE-RICH REPEAT CONTAINING PROTEIN 168 637 - -
Vvi18g1694 867 PANTHER LEUCINE-RICH REPEAT CONTAINING PROTEIN 630 834 - -
Vvi18g1694 867 PANTHER LEUCINE-RICH REPEAT CONTAINING PROTEIN 11 160 - -
Vvi18g1694 867 SUPERFAMILY RNI-like 148 273 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1694 - - - vvi:100261885 1710.66
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1694 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bhi06g00164 . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004792 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 24 24