Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1697 ATGATTTGTCTAGGATTACAATTAAAGAACTATAGATTCAGGAGCATAGATCAAAGAAAGTTAAAACTGGGAATCAATTTATCAAAAACCGATAACAAACTCTCTCATAAAAACTCACATAATGACACAGACCCACTAGATTTACATTGTCCATTTGTGCAGGATTTGAAACACGAGAAGAGTTCAAATGGAGTATTTCTCCCTAATTCCGACTACATTAGCGATGGAATCTGTATTGTTGTTCCGGGAAGCAGTGGAATTCCCAAGTGGATAAGGAATCAGACAGAGGGATATCATATCACAATGGGCCTTCCTCAGAATTGTTATGAAAATGATGACTTCTTGGGAATTGCTATATGCTCTGTTTATGCTCCAATCTATGAATGTGAGGACACACCTGAAAATTATTTTGCACATACATTGGAGAATCCATCTGGTGACGAAGTCCTAAATGAAGATGATGATTTACTTGAAGCTGAATCTTCAATCTCCACTAAGTTACAATGTCAACTGTCATTGAGTGAAGGATATGGATCTTCTTCCCTGTGTGTGCGACATCTCAGTTTTTGCTCTACTTGTAAATGCTACCATAATGGAGGTGTATCAGGACAAATGTGGGTGATATTCTATCCCAAGGCTGCTATTCTGGAGAGCTGTCACACCAATCGATTCATGCATCTTAATGCTGTATTTATAGACTCTCGCAATCATTTTAAGGTGCTCAAGTGTGGGCTCCAACCTATATACTCCCAAGACCCAATAGTACAGACTGAGGATGTGGATGCTAGCTGCTTGGAATGTCAGAGGAACGTGGAACACCGAAAGCTTTGTTTAAAGGGTCAGCCAATCAGCCTACTACCCATTGAGCATGCCTCTGAATTTGATACCTTATGTTTGCGAGAGTGCAAAAACCTTGAGAGTCTGCCAACAAGCATTTGGGAGTTCAAATCCCTAAAATCTCTCTTTTGCTCTCACTGTTCACAATTACAGTACTTTCCAGAAATCTTGGAGAATATGGAAAACTTAAGGGAGCTTCACTTGAATGAAACGGCTATAAAAGAGCTACCATCATCAATCGAACATTTGAATAGGCTTGAAGTTTTGAATCTGGAGGGCTGCAAAAAACTTGTGACTCTTCCAGAAAGCATTTGTAATTTATGCTTTCTTGAAGTTCTCGATGTCAGTTACTGTTCAAAACTCCACAAATTGCCACAAAACCTGGGGAGGCTGCAAAGCTTGAAGCATCTCTGTGCTTGTGGCTTAAATTCAACATGTTGCCAATTGGTTTCTTTGTTGGGTTTATGCTCCTTAAAGAATTTAATTCTACCTGGGTCAAAGCTAATGCAAGGAGTAGTCCTGAGTGATATTTGCTGCTTGTACTCGTTGGAAGTGTTAGATCTATCTTTCTGCAGAATAGATGAAGGAGGAATCCCCACTGAAATTTGCCACCTATCATCTCTGCAACATTTACATCTAAGTGGGAATCTTTTTAGGAGCATACCTTCTGGGGTCAATCAACTTTCTATGCTGAGAATCCTTAACTTGGGTCACTGTCAAGAGCTTCGACAAATTCCAGCGCTTCCATCCAGTTTGCGTGTCTTAGATGTACATGAGTGCCCATGGCTGGAAACTTCTTCGGGTCTACTCTGGTCTTCTCTATTCAACTGCTTCAAATCATTGATTCAGGATTTTGAATGCAGGATTTATCCTAGAGACAGCCTTTTTGCCCGAGTAAATCTTATTATTTCAGGAAGTTGTGGAATTCCAAAATGGATAAGCCATCACAAAAAGGGAGCTAAAGTGGTAGCAAAGCTTCCTGAAAATTGGTATAAAAATAACGACTTGTTGGGTTTTGTTTTGTACTCTCTTTATGATCCACTTGATAATGAATCTGAGGAGACACTGGAGAATGATGCAGCTTACCTCAAGTGTTCTTTGACTTTGCGTGCTCATGAATCTCAGTTTGTGGATGAACTCCAGTTTTATCCATCGTTTCGCTGCTATGATGTTGTACCAAAAATGTGGATGATTTATTATGCAAAGGTGGTGATTGAGAAGAAGTATCACTCAAATAAATGGAGGCAGTTGACGGCTTCATTTTGTGGCTTCTCACATGGTAAAGCAATGAAAGTGGAAGAGTGTGGGATCCATCTTATATATGCCCATGATCATGAAAAGAACAATGGTAAAGCAATGATACCCACCATTTGCCGGAAATGTCAAGCGGATGTGCAATCCCGACGGAAGCTTTGTTTAAAGGGAAGTGCCATCAATGAACTACCCACTATTGAGTGTCCCTTAGAATTTGATAGCTTATGTTTGCGAGAATGCAAAAACCTTGAGCGTCTTCCCAGTAGCATTTGTGAGTTGAAATCCCTTACAACTCTCAACTGCTCAGGCTGTTCACGATTAAGGAGCTTTCCAGAAATCCTTGAGGATGTGGAAAATTTAAGAAATCTTCATTTAGATGGAACTGCTATAAAAGAACTACCAGCATCAATTCAATATTTAAGAGGGCTTCAATGTTTGAATCTTGCAGATTGCACCAACCTTGTGAGTCTTCCAGAGACCATTTGTAATTTGAGTTCTCTTAAAATTCTAGATGTCAGTTTCTGTACAAAACTTGAGGAATTTCCCAAGAACCTGAGGAGTTTGCAATGTTTAGAGTGTTTGCATGCTTCAGGTCTAAATCTAAGCATGGACTGTTTTAGTAGCATACTTGCAGGCATCATTCAACTTTCTAAACTGAGAGTCGTTGAATTGAGTCACTGCCAGGGGCCTCTACAAGTTCCAGAGCTTACGCCAAGTTTACGAGTTCTAGATGTCCACAGTTGCACATGCTTGGAAACTTTATCAAGTCCATCAAGTCTACTTGGTGTTTCTCTGTTCAAATGCTTTAAATCAACAATTGAGGATTTGAAACACGAGAAGAGTTCAAATGGAGTATTTCTCCCTAATTCCGACTACATTGGCGATGGAATCTGTATTGTTGTTCCGGGAAGCAGTGGAATTCCCAAGTGGATAAGGAATCAGAGAGAGGGATATCGAATCACAATGGAGCTTCCTCAGAATTGTTATGAAAATGATGACTTCTTGGGGATTGCTATATGCTGTGTTTATGCTCCACTCGATGAATGTGAGGATATACCAGAAAATGATTTTGCACATACATTGGAGAATGAATCTGATGATTTACTTGAAGCTGAATCTTCAATCTCCACTGAGTTACAATGTCAACTGTCATTGAGTGAAGGATATGGATCTTCTTCCCTGTGTGTGCGACATCTCAGTTTTCGCTCTACTTGTAAATGCTACCATAATGGAGGTGTATCAGAACAAATGTGGGTGATATTCTATCCCAAGGCTGCTATTCTGGAGAGCGGTCCCACCAATCCATTCATGTATCTTGCGGCTACATTTAAGGACCCTCAGAGTCATTTTAAGGTGCTCAAGTGTGGGCTCCAACCTATATACTCCCAAGATCCAATAGTAGTACAGACTGAGGATGTGGATGCTAGATGCTTGGATTGTCAGAGGAACGTGGAACACCGAAAGCTTTGTTTAAAGGGTCAGACAATCAGCCTACTACCCATTGAGCATGCCTCTGAATTTGATACCTTATGTTTGCGAGAGTGCAAAAACCTTGAGAGTCTGCCAACAAGCATTTGGGAGTTCAAATCCCTAAAATCTCTCTTTTGCTCTCACTGTTCACAATTACAGTACTTTCCAGAAATCTTGGAGAATATGGAAAACTTAAGGGAGCTTCACTTGAACGAAACGGCTATAAAAGAGCTACCATCATCAATCGAACATTTGAATAGGCTTGAAGTTTTGAATCTGGACCGCTGCGAAAACCTTGTGACTCTTCCAGAAAGCATTTGTAATTTATGCTTTCTTGAAGTTCTCAATGTCAGTTACTGTTCAAAACTCCACAAATTGCCACAAAACCTAGGGAGGCTGCAAAGCTTGAAGCATCTCCGTGCTTGTGGCTTAAATTCAACATGTTGCCAATTGCTTTCTTTGTCGGGTTTATGCTCCTTAAAGAATTTAATTCTAACTGGGTCAAAGCTAATACAAGGAGAAATCCTGAGTGATATTTGCTGCTTGTACTCGTTGGAAGTGTTAGATCTATCTTTCTGCAGTATAGATGAAGGAGGAATCCCCACTGAAATTTGCCACCTATCATCTCTGCGACAATTACTTCTAACCGGGAATCTTTTTAGGAGCATACCTTCTGGGGTCAATCAACTTTCTATGCTGAGACTCCTTGACTTGGGTCACTGTCAAGAGCTTCGACAAATTCCAGCGCTTCCATCCAGTTTGCGTGTCTTAGATGTACATGAGTGCACACGGCTGGAAACTTCTTCCGGTCTACTCTGGTCTTCTCTATTCAACTGCTTCAAATCATTGATTCAGGATTTTGAATGCAGGATTTATCCTAGAGAAAACCGTTTTGCCCGAGTACATCTTATTATTTCAGGAAGTTGTGGAATTCCAAAATGGATAAGCCATCACAAAAAGGGAGCTAAAGTGGTAGCAGAGCTTCCTGAAAATTGGTATAAAAATAACGACTTGTTGGGTTTTGTTTTGTACTCTCTCTATGATCCACTTGATAATGAATCTGAGGAGACACTGGAGAATTATGCAACTTCCCTCAAGTGTGGTTTGACTTTGCGTGCTCATGAATCTCAGTTTGTGGATGAACTCCGGTTTTATCCCACGTTTCACTGCTATGATGTTGTACCAAATATGTGGATGATTTATTATCCCAAGGTGGAGATTGAGAAGTATCACTCAAATAAACGGAGGTGGAGGCAGTTGACCGCTTCATTTTGTGGCTTCTTATGTGGTAAAGCAATGAAAGTGGAAGAGTGTGGGATCCATCTTATATATGCCCATGATCATGAAAAGAACAATGGTAAAGCAATGATACCCACCATTTGCCAGGAATGTTAA 4956 40.33 MICLGLQLKNYRFRSIDQRKLKLGINLSKTDNKLSHKNSHNDTDPLDLHCPFVQDLKHEKSSNGVFLPNSDYISDGICIVVPGSSGIPKWIRNQTEGYHITMGLPQNCYENDDFLGIAICSVYAPIYECEDTPENYFAHTLENPSGDEVLNEDDDLLEAESSISTKLQCQLSLSEGYGSSSLCVRHLSFCSTCKCYHNGGVSGQMWVIFYPKAAILESCHTNRFMHLNAVFIDSRNHFKVLKCGLQPIYSQDPIVQTEDVDASCLECQRNVEHRKLCLKGQPISLLPIEHASEFDTLCLRECKNLESLPTSIWEFKSLKSLFCSHCSQLQYFPEILENMENLRELHLNETAIKELPSSIEHLNRLEVLNLEGCKKLVTLPESICNLCFLEVLDVSYCSKLHKLPQNLGRLQSLKHLCACGLNSTCCQLVSLLGLCSLKNLILPGSKLMQGVVLSDICCLYSLEVLDLSFCRIDEGGIPTEICHLSSLQHLHLSGNLFRSIPSGVNQLSMLRILNLGHCQELRQIPALPSSLRVLDVHECPWLETSSGLLWSSLFNCFKSLIQDFECRIYPRDSLFARVNLIISGSCGIPKWISHHKKGAKVVAKLPENWYKNNDLLGFVLYSLYDPLDNESEETLENDAAYLKCSLTLRAHESQFVDELQFYPSFRCYDVVPKMWMIYYAKVVIEKKYHSNKWRQLTASFCGFSHGKAMKVEECGIHLIYAHDHEKNNGKAMIPTICRKCQADVQSRRKLCLKGSAINELPTIECPLEFDSLCLRECKNLERLPSSICELKSLTTLNCSGCSRLRSFPEILEDVENLRNLHLDGTAIKELPASIQYLRGLQCLNLADCTNLVSLPETICNLSSLKILDVSFCTKLEEFPKNLRSLQCLECLHASGLNLSMDCFSSILAGIIQLSKLRVVELSHCQGPLQVPELTPSLRVLDVHSCTCLETLSSPSSLLGVSLFKCFKSTIEDLKHEKSSNGVFLPNSDYIGDGICIVVPGSSGIPKWIRNQREGYRITMELPQNCYENDDFLGIAICCVYAPLDECEDIPENDFAHTLENESDDLLEAESSISTELQCQLSLSEGYGSSSLCVRHLSFRSTCKCYHNGGVSEQMWVIFYPKAAILESGPTNPFMYLAATFKDPQSHFKVLKCGLQPIYSQDPIVVQTEDVDARCLDCQRNVEHRKLCLKGQTISLLPIEHASEFDTLCLRECKNLESLPTSIWEFKSLKSLFCSHCSQLQYFPEILENMENLRELHLNETAIKELPSSIEHLNRLEVLNLDRCENLVTLPESICNLCFLEVLNVSYCSKLHKLPQNLGRLQSLKHLRACGLNSTCCQLLSLSGLCSLKNLILTGSKLIQGEILSDICCLYSLEVLDLSFCSIDEGGIPTEICHLSSLRQLLLTGNLFRSIPSGVNQLSMLRLLDLGHCQELRQIPALPSSLRVLDVHECTRLETSSGLLWSSLFNCFKSLIQDFECRIYPRENRFARVHLIISGSCGIPKWISHHKKGAKVVAELPENWYKNNDLLGFVLYSLYDPLDNESEETLENYATSLKCGLTLRAHESQFVDELRFYPTFHCYDVVPNMWMIYYPKVEIEKYHSNKRRWRQLTASFCGFLCGKAMKVEECGIHLIYAHDHEKNNGKAMIPTICQEC* 1652
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 27764433 27771795 - Vvi18g1697 Vvi18g1697 781400

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1697 1651 PANTHER OS11G0677101 PROTEIN 448 893 - -
Vvi18g1697 1651 PANTHER OS11G0677101 PROTEIN 1360 1651 - -
Vvi18g1697 1651 PANTHER OS11G0677101 PROTEIN 233 418 - -
Vvi18g1697 1651 PANTHER OS11G0677101 PROTEIN 903 1347 - -
Vvi18g1697 1651 SUPERFAMILY L domain-like 285 544 - -
Vvi18g1697 1651 SMART LRR_typ_2 339 362 IPR003591 -
Vvi18g1697 1651 SMART LRR_typ_2 1394 1417 IPR003591 -
Vvi18g1697 1651 SMART LRR_typ_2 1272 1296 IPR003591 -
Vvi18g1697 1651 SMART LRR_typ_2 837 861 IPR003591 -
Vvi18g1697 1651 SMART LRR_typ_2 814 836 IPR003591 -
Vvi18g1697 1651 SMART LRR_typ_2 1249 1271 IPR003591 -
Vvi18g1697 1651 SMART LRR_typ_2 484 507 IPR003591 -
Vvi18g1697 1651 SMART LRR_typ_2 386 410 IPR003591 -
Vvi18g1697 1651 SUPERFAMILY L domain-like 1184 1457 - -
Vvi18g1697 1651 Gene3D Ribonuclease Inhibitor 1166 1356 IPR032675 -
Vvi18g1697 1651 Gene3D Ribonuclease Inhibitor 428 564 IPR032675 -
Vvi18g1697 1651 Pfam C-JID domain 1497 1635 IPR045344 -
Vvi18g1697 1651 Pfam C-JID domain 85 252 IPR045344 -
Vvi18g1697 1651 Pfam C-JID domain 587 724 IPR045344 -
Vvi18g1697 1651 Pfam C-JID domain 1002 1161 IPR045344 -
Vvi18g1697 1651 Gene3D Ribonuclease Inhibitor 257 427 IPR032675 -
Vvi18g1697 1651 Gene3D Ribonuclease Inhibitor 681 978 IPR032675 -
Vvi18g1697 1651 ProSiteProfiles Leucine-rich repeat profile. 486 507 IPR001611 GO:0005515
Vvi18g1697 1651 PANTHER LEUCINE-RICH REPEAT CONTAINING PROTEIN 448 893 - -
Vvi18g1697 1651 PANTHER LEUCINE-RICH REPEAT CONTAINING PROTEIN 903 1347 - -
Vvi18g1697 1651 PANTHER LEUCINE-RICH REPEAT CONTAINING PROTEIN 233 418 - -
Vvi18g1697 1651 PANTHER LEUCINE-RICH REPEAT CONTAINING PROTEIN 1360 1651 - -
Vvi18g1697 1651 SUPERFAMILY RNI-like 749 955 - -
Vvi18g1697 1651 Gene3D Ribonuclease Inhibitor 1357 1456 IPR032675 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1697 - - - vvi:100261885 2748.0
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1697 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004792 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 24 24