Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1698 ATGGTAGTTATCCCAATTTTCTATCATGTGGATCCGTCTGAAGTGCGGAACCAAACTGAGATTTACGGAGAAGCATTTACCCATCATGAGAAGAATGCAGAGGAGGAGAGAAAGGAAAAGATAAGGAAATGGAAGACTGCCCTGAGGCAAGCAAGCAATCTAGCCGGATATGATGCGACGAACAGGTACGAATCAGAGCTTATTGATGAAATTATTGAGAACGTCCTTAGAAGCTTCCCTAAGACTTTAGTTGTTAACGAGAACATTGTTGGAATGGATTCTCGTTTGGAAAGACTAATATCATTGTTAAAGATTGAGTTGAATGATGTTCGCATGGTCGGGGTTTATGGGCTTGGTGGTATCGGCAAGACCACCATCATCAATGCTCTTTATAACCGAATCTCAAATCAATTCGAAAGTGTTAGCTTGCTCACAGATGTCAGAAAAGAATCCACAGAAAATTCTGGTCTTCTTAAGTTACAACAACAACTTCTTAATGATACTCTAAGGACAACGAGGAAAATAGTTTTAAGGGATGTTCATGAAGGTATCAAAGAAATAAGGGACAAGCTTTCCTCAAAAAAGGTTCTTGTTTTTCTGGATGATGTAGATGAGCTGACACAATTAGAACACTTAATTGGAAAGCATGATTGGTTTGGTCCAGGAAGCAGAATCATCATTACTACTAGGAAAAAAGATTTGCTAACTAGGCATGAAGTAAATGATATGTATGAAGTTGAGAAATTATATTTTCACGAAGCTCTTCAACTTTTTTGCCGTTATGCCTTTAAACAACATCATCCGAAGGAAGGTTATGGAGATCTCTCTCATCAAGTAGTACAATATGCTGATGGTCTTCCATTAGCACTTAAAGTTTTGGGTTCTCTATTATTTGGAAAGAGACTACCAGATTGGAAAAGTGAATTGCAGAAGCTGGAAAAGGTGCCTAACATGGAAATTGTAAAAGTGCTTAAAATAAGTTTCGATGGATTGGATTATACACAAAGGATGATATTTCTCGACATTGCATGTTTCTTTAGAGGAGATGATGTGAAAAGAGTTTCAAGAATATTGGATGCTTCCGAATTCAATGCGGAAAGTGGAATAAATGCTCTCGTTGATAGGTGTTTCATAACCATTTCAAAGGACAACAGAATAGATATGCATGATTTGTTAGCCCAAATGGGCAAGGGCATTGTTGATCAAGAATGTCCTAATGAGCCAGGAGAGAGGAGCAGATTATGGAGACATATAGATATTTATCGAGTATTAAAAAGAAATACGGGGACTGAAAAAATCGAAGGGATATATCTTCATGTGGACAAATCAGAACAAATACAGTTTACATCCAAAGCTTTCGAAAGGATGCATAGACTTAGATTGCTTTCCATCTCCCACAATCACGTACAACTCTCTAAAGATTTTGTATTTCCGTATGACTTGACATACCTTAGATGGAATGGATATTCTTTAGAATCTCTACCATCAAACTTTCATGCGAACAATCTTGTTTCCCTCATATTGGGCAATAGTAACATAAAACTACTTTGGAAAGGAAACATGTGTCTTAGAAATTTAAGGCGCATCAATCTCAGCGATTCACAACAACTCATTGAGCTACCAAATTTCTCAAACGTGCCAAATTTGGAGGAACTAATTCTTTCAGGGTGTGTAAGCCTTGAGAGTCTTCCTGGGGACATTCATGAGTCGAAACACCTTTTAACTCTTCATTGCACTGGCTGTTCAAAACTAGCTAGTTTTCCAAAAATCAAGAGCAATATTGCAAAACTAGAGGAGCTTTGTTTAGATGAAACAGCTATAAAAGAGCTACCATCATCGATTGAACTTCTAGAAGGCCTTCGCTACTTGAATTTGGATAATTGTAAAAACCTTGAGGGTCTCCCGAACAGCATTTGTAATTTGAGATTTCTTGTTGTTCTAAGTCTTGAAGGCTGCTCAAAACTTGACAGATTGCCGGAGGACTTGGAGAGAATGCCATGTCTAGAGGTTCTTTATTTAAATTCGCTTAGTTGTCAATTGCCTTCTCTGTCAGGTTTATCTCTCTTAAGGGAACTATATTTAGATCAATGCAATCTAACACCAGGAGTAATAAAGAGTGATAACTGCTTGAACGCATTGAAAGAATTTAGTCTAGGAAATTGCATTCTAAATGGAGGAGTGTTCCATTGTATTTTCCATCTATCCTCACTGGAAGTATTAAATCTAAGTCGGTGCAGTCCAGAGGAAGGAGGAACCCTCAGTGACATACTTGTGGGTATCAGTCAACTCTCTAACCTTAGAGCCCTTGACTTGAGTCACTGCAAGAAGCTTTCACAAATTCCAGAGCTTCCTTCAAGTCTGCGACTGTTAGATTGTCACAGCTCAATTGGGATCTCATTGCCACCTATGCATTCTCTGGTGAATTGCCTCAAATCAGCAAGTCAGATAAACATGCTTCTAAATCAGAATAGGAATAAAAAAGGACCAATATTGGAAATTTATAGGCTTGATAAAGTTTCAAAAAGTTCAAAAAGCTTCCAGAAACAAAGGATAACCTATTTGATTAAACAAGGGAAAAGAAATGTGATAAAAAGATTAAAAAGCACAAAAAAGATCTAG 2619 37.53 MVVIPIFYHVDPSEVRNQTEIYGEAFTHHEKNAEEERKEKIRKWKTALRQASNLAGYDATNRYESELIDEIIENVLRSFPKTLVVNENIVGMDSRLERLISLLKIELNDVRMVGVYGLGGIGKTTIINALYNRISNQFESVSLLTDVRKESTENSGLLKLQQQLLNDTLRTTRKIVLRDVHEGIKEIRDKLSSKKVLVFLDDVDELTQLEHLIGKHDWFGPGSRIIITTRKKDLLTRHEVNDMYEVEKLYFHEALQLFCRYAFKQHHPKEGYGDLSHQVVQYADGLPLALKVLGSLLFGKRLPDWKSELQKLEKVPNMEIVKVLKISFDGLDYTQRMIFLDIACFFRGDDVKRVSRILDASEFNAESGINALVDRCFITISKDNRIDMHDLLAQMGKGIVDQECPNEPGERSRLWRHIDIYRVLKRNTGTEKIEGIYLHVDKSEQIQFTSKAFERMHRLRLLSISHNHVQLSKDFVFPYDLTYLRWNGYSLESLPSNFHANNLVSLILGNSNIKLLWKGNMCLRNLRRINLSDSQQLIELPNFSNVPNLEELILSGCVSLESLPGDIHESKHLLTLHCTGCSKLASFPKIKSNIAKLEELCLDETAIKELPSSIELLEGLRYLNLDNCKNLEGLPNSICNLRFLVVLSLEGCSKLDRLPEDLERMPCLEVLYLNSLSCQLPSLSGLSLLRELYLDQCNLTPGVIKSDNCLNALKEFSLGNCILNGGVFHCIFHLSSLEVLNLSRCSPEEGGTLSDILVGISQLSNLRALDLSHCKKLSQIPELPSSLRLLDCHSSIGISLPPMHSLVNCLKSASQINMLLNQNRNKKGPILEIYRLDKVSKSSKSFQKQRITYLIKQGKRNVIKRLKSTKKI* 873
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 27779525 27785293 - Vvi18g1698 Vvi18g1698 781401

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1698 872 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 81 342 IPR027417 -
Vvi18g1698 872 Pfam TIR domain 1 75 IPR000157 GO:0007165
Vvi18g1698 872 SUPERFAMILY L domain-like 388 800 - -
Vvi18g1698 872 ProSiteProfiles TIR domain profile. 1 79 IPR000157 GO:0007165
Vvi18g1698 872 SUPERFAMILY Toll/Interleukin receptor TIR domain 2 57 IPR035897 -
Vvi18g1698 872 CDD Ras_like_GTPase 114 258 - -
Vvi18g1698 872 Gene3D Ribonuclease Inhibitor 436 593 IPR032675 -
Vvi18g1698 872 Gene3D Ribonuclease Inhibitor 594 795 IPR032675 -
Vvi18g1698 872 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 3 612 - -
Vvi18g1698 872 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 599 864 - -
Vvi18g1698 872 PRINTS Disease resistance protein signature 112 127 - -
Vvi18g1698 872 PRINTS Disease resistance protein signature 190 204 - -
Vvi18g1698 872 PRINTS Disease resistance protein signature 283 297 - -
Vvi18g1698 872 PRINTS Disease resistance protein signature 761 777 - -
Vvi18g1698 872 Gene3D - 81 244 IPR027417 -
Vvi18g1698 872 Gene3D - 1 80 IPR035897 -
Vvi18g1698 872 ProSiteProfiles Leucine-rich repeat profile. 765 787 IPR001611 GO:0005515
Vvi18g1698 872 Pfam NB-ARC domain 96 316 IPR002182 GO:0043531
Vvi18g1698 872 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 3 612 IPR044974 GO:0006952
Vvi18g1698 872 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 599 864 IPR044974 GO:0006952
Vvi18g1698 872 Gene3D - 249 332 IPR042197 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1698 - - - vvi:100261885 1589.32
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1698 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bhi06g00159 . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013044 0 2 0 0 0 0 0 0 0 0 0 0 0 1 2 0 0 3 0 0 0 0 1 2 4 4 3 0 1 1 24