Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g17 ATGACTATCGCCACACCACCTTCTGCCGCGTGGAGATACGAGAGGGGAAGAGTGTTTAGTGTGGCAAGAGCAGCGGGGATCCGCGGATCTGGAAGCAGCCAAAAGCGTTCTGGTTTTAGTACCCTTTTCGAATCCCAGTTGAAGGACATGGAAGCACAGGAAGAGGAAGGGAAAAATGACCATGTCTTAAGGAAGCTACAAGAGTCTGTGGATTCCAATCCTGATGACGCCTCCCTTCATTTTAATCTCGGGGTCTTCTTGTGGGAAAAGGAGGAACAAGAGTGGAAGGAAAAAGCTGCGGAGCATTTTGTAAGATCAGCCAAATTAAATCCGCAGAATGGGGACGCATTCAGATATTTGGGGCATTATTACGCAAGGGTATCCGTTGATACTCAGAGAGCTTTCAAGTGTTACCAGAGATCGGTCACCCTTAATCCCAATGATTCCGATTCTGGGGAAGCGTTGTGTGATTTGTTGGACCTAGGAGGAAAGGAGACTTTAGAGATTGCGGTCTGCAGGGAAGCATCAGAGAAGTCCCCTAGGGCTTTTTGGGCTTTTCGAAGATTGGGTTACCTGCAGCTCCATCAAAATAAATGGTCTGAAGCAGTACAGAGTCTTCAACATGCCATTCGAGGGTATCCTAGCTGTGCTGATTTGTGGGAAGCTCTGGGGCTTGCCTACCAGCGATTGGGTATGTTTACTGCAGCTATAAAGTCATATGGGAGAGTCATTGAATTGGAGGATTCCAGAATCTTCGCATTGGTTGAGAGTGGAAACATCTTTTTGATGCTTGGTTCCTTTAGAAAGGGTATCGAGCAATTTCGGCAAGCTTTGGAGATCTCACCTAAAAGTGTATCTGCACACTATGGTCTTGCTTCTGGGCTGCTTAGTTTGTCAAAGGAATGTACCAATTTGGGTGCTTTTAGATGGGGAACTTCACTTTTAGAGGAAGCATCTAAAGTTGCAAAATCAACTACCTGTTTGGCTGGAAATGTTTCATGTATTTGGAAATTGCATGGGGATATTCAGCTTGCATATGCAAAATGTTTACCGTGGTTGGAGGAAAACTGGAACCTAGAGATTGATGAGGAAGCTTTCAGTAACTCCATTCTTAATTGGAAGCGATCCTGCTGTTTGTCTGCGATATCTGCCAATTATTCTTACCAGAGGGCTTTGCACTTAGCCCCATGGCAAGCTAATATCTATACTGACATTGCAATAAGTTCAGATCTCATTTGCTCTTTGAAGGAGGATGATAAACATAACCCAAATTCTTGGCAGCTACCTGAAAAAATGTCTTTGGGAGGCTTGTTACTTGAGGGTGACAATAATGAGTTCTGGGTGACATTGGGATTTGTATCTGGTCATAATGCACTGAAGCAACATGCTTTTATCAGGGGACTGCAGTTAGATGTATCTTTAGCTGTTGCATGGGCATGCCTTGGGAAGCTTTATAGAAAAGAGGGCGAGAAGCAATTGGCAAGGCAGGCATTTGATTCTGCTAGAAGTATAGATCCTTCACTTGCATTACCATGGGCAGGCATGTCAGCTGATACACATGCCAGGGATCCCACAACAGATGAGGCTTATGAGAGTTGTTTACGTGCTGTGCAGATATTGCCCGTTGCAGAGTTTCAAATTGGCCTTGCAAAGCTTGCTCTTCTTTCAGGTCACCTTTCATCCTCACAGGTCTTTGGAGCCATCCAACAGGCTGTGCAGCATGCACCTTACTATCCAGAATCCCATAATTTGAATGGACTGGTTTGTGAGGCACGGTGTGATTATCAGTCTGCTGTTGCTTCTTATAGGCTAGCACGCTGCGCAATCAACACCTTTTCAGGCTCCATATTGAAATCCCATTTGAGAGACATATCATTTAATATTGCAAGATCACTCAGTAAAGCAGGGAATGCCCTTGATGCTGTTCAAGAATGTGAAGATTTGAAGAAAGAAGGTCTGCTTGATGCACAAGGTTTGCAAATATATGCTATCTCCTTATGGCAAATTGGTGAAAATGACCTTGCCCTGTCTGTGGCAAGGGATCTAGCTGCAAGTGAATCAGCAATAATAAGCATTTTGAAAATGCCGAAAGAACTATTTCAGAATTCAAAGATTAGTTTTGTTGTGTCCGCCATTGACGCTCTTGATGAAAGTAATAAGCTGGAATCAGTTGTTTCAAGCAGTCGATACTTTCTTGCATCTCATGAAGAGATCGCTAGAATGCACTGTTTAGTAGCACTTGGTAAACTGGTCAAACAAGGATCAGAGCACTGCCTTGGATTTGAAAATGGGGTTCATCACCTTAGAAAAGCTCTTCACATGTTCCCTAACAGTGTTTTGATAAGGAATCTTCTTGGTTATCTTTTACTATCCTCTCAAGAAGGGGAAGATGCTCATAGTGCTAGTAGGTGCTGTATTGTAGACCCCTCCCACTCTCCCAATAAAGAAGGTTCAAAGTCAGCATTTGAGATCCTTGGTGCTGGAGCAGTTGCTTGCTTTGCCAGTGGCATGAGCAACCAGAAATTCTCTTTCCCAACATGCAGATACCGGTGCATGAGTGGACCAGGAGCAATACAACAGCTGCAGAAGTGGTTGCATAGAGAACCTTGGAACCATAATGCACGTTACTTGTTGATACTTAATTTTCTACAGAAGGCACGTGAAGAGAGATTTCCAAGACATCTTTGTACAATAATTGAGCGGCTAAATTTTGTGGCTATTTCCAACCACTTATATTTAAAGAAGGATACATGTTGTCAATACCAAAAGTTCCAGCTGCTACTTTGTGCTTCTGAAATCAGTTTGCAAGGTGGTGATCATCTTGGCTGTGTCAACCATGCTGAAAATGCTTCAACACTCTTGCTTCCTGATTGCTACCTCTTTTTTGCGCATTTGCAACTATGCCGTGCTTATGTTGCAAAAGATGATTTTAAAAATCTACGGAAAGAGTATATAAAATGCTTGGAGCTTAAAACAGATTATTGTATCGGTTGGCTATGTCTTAAATTCATGGATCCTCACCATGAACTACAAAATGATTTGAGCATCTCAGAGTTGAACTTCAAGGAGTGCTCAAAGGAGAGAAAGAGTTCATGTAACAAGTGGATGGCTTTATTTGATTTGCTGCAGGGTCTGATTTCTGTTCAGAATCAAGATTTTCTCTGCGCAGAAGAATTTCTTGCGCAAGCTTGTTCGTTGTCAGATACTGAGAGCTGCATCTTCCTATGTCATGGTGTCATTTGTATGGAGCTTGCCAGGCAGCAGTGTGATTCCCAGTATTTGTCACATGCTATAAAGAGTCTCATGAAAGCCCAAGAGATTTCTCTGATTCCCTTACCTTTTGTCCCAACATTGCTAGCTCAAGCAGAGGCAAGCAGAGGCTCTAAAGCAAAGTGGGAGAAAAATCTCTGTCTTGAATGGTTTTCTTGGCCACCAGAGGTGAGGCCTGCTGAACTCTTTCTTCAAATGCATTTGCTTGCAAGACACTCCAAATCCGGGTCTGAGTCATCCTCCTGTGTGGAGCCCCATCAGAGCCAACAGAGGTGGGTTCTCCGGGCAATCCATTTGAACCCTTCTTGTTTGAGATATTGGAAGGTTTTGCAGAAGTTAATGCAGTGA 3618 43.39 MTIATPPSAAWRYERGRVFSVARAAGIRGSGSSQKRSGFSTLFESQLKDMEAQEEEGKNDHVLRKLQESVDSNPDDASLHFNLGVFLWEKEEQEWKEKAAEHFVRSAKLNPQNGDAFRYLGHYYARVSVDTQRAFKCYQRSVTLNPNDSDSGEALCDLLDLGGKETLEIAVCREASEKSPRAFWAFRRLGYLQLHQNKWSEAVQSLQHAIRGYPSCADLWEALGLAYQRLGMFTAAIKSYGRVIELEDSRIFALVESGNIFLMLGSFRKGIEQFRQALEISPKSVSAHYGLASGLLSLSKECTNLGAFRWGTSLLEEASKVAKSTTCLAGNVSCIWKLHGDIQLAYAKCLPWLEENWNLEIDEEAFSNSILNWKRSCCLSAISANYSYQRALHLAPWQANIYTDIAISSDLICSLKEDDKHNPNSWQLPEKMSLGGLLLEGDNNEFWVTLGFVSGHNALKQHAFIRGLQLDVSLAVAWACLGKLYRKEGEKQLARQAFDSARSIDPSLALPWAGMSADTHARDPTTDEAYESCLRAVQILPVAEFQIGLAKLALLSGHLSSSQVFGAIQQAVQHAPYYPESHNLNGLVCEARCDYQSAVASYRLARCAINTFSGSILKSHLRDISFNIARSLSKAGNALDAVQECEDLKKEGLLDAQGLQIYAISLWQIGENDLALSVARDLAASESAIISILKMPKELFQNSKISFVVSAIDALDESNKLESVVSSSRYFLASHEEIARMHCLVALGKLVKQGSEHCLGFENGVHHLRKALHMFPNSVLIRNLLGYLLLSSQEGEDAHSASRCCIVDPSHSPNKEGSKSAFEILGAGAVACFASGMSNQKFSFPTCRYRCMSGPGAIQQLQKWLHREPWNHNARYLLILNFLQKAREERFPRHLCTIIERLNFVAISNHLYLKKDTCCQYQKFQLLLCASEISLQGGDHLGCVNHAENASTLLLPDCYLFFAHLQLCRAYVAKDDFKNLRKEYIKCLELKTDYCIGWLCLKFMDPHHELQNDLSISELNFKECSKERKSSCNKWMALFDLLQGLISVQNQDFLCAEEFLAQACSLSDTESCIFLCHGVICMELARQQCDSQYLSHAIKSLMKAQEISLIPLPFVPTLLAQAEASRGSKAKWEKNLCLEWFSWPPEVRPAELFLQMHLLARHSKSGSESSSCVEPHQSQQRWVLRAIHLNPSCLRYWKVLQKLMQ* 1206
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 263664 297925 - Vvi18g17 Vvi18g17 779720

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g17 1205 Gene3D Tetratricopeptide repeat domain 708 1136 IPR011990 GO:0005515
Vvi18g17 1205 Gene3D Tetratricopeptide repeat domain 34 327 IPR011990 GO:0005515
Vvi18g17 1205 ProSiteProfiles TPR repeat profile. 251 284 IPR019734 GO:0005515
Vvi18g17 1205 ProSiteProfiles TPR repeat profile. 475 508 IPR019734 GO:0005515
Vvi18g17 1205 SUPERFAMILY TPR-like 568 678 IPR011990 GO:0005515
Vvi18g17 1205 PANTHER TETRATRICOPEPTIDE REPEAT PROTEIN 37 40 891 - -
Vvi18g17 1205 SUPERFAMILY HCP-like 56 292 - -
Vvi18g17 1205 ProSiteProfiles TPR repeat profile. 217 250 IPR019734 GO:0005515
Vvi18g17 1205 Gene3D Tetratricopeptide repeat domain 381 688 IPR011990 GO:0005515
Vvi18g17 1205 SUPERFAMILY TPR-like 440 605 IPR011990 GO:0005515
Vvi18g17 1205 SMART tpr_5 77 113 IPR019734 GO:0005515
Vvi18g17 1205 SMART tpr_5 114 148 IPR019734 GO:0005515
Vvi18g17 1205 SMART tpr_5 579 612 IPR019734 GO:0005515
Vvi18g17 1205 SMART tpr_5 475 508 IPR019734 GO:0005515
Vvi18g17 1205 SMART tpr_5 251 284 IPR019734 GO:0005515
Vvi18g17 1205 SMART tpr_5 183 216 IPR019734 GO:0005515
Vvi18g17 1205 SMART tpr_5 217 250 IPR019734 GO:0005515
Vvi18g17 1205 PANTHER SUPERKILLER 3 PROTEIN-RELATED 40 891 IPR039226 GO:0006401|GO:0055087
Vvi18g17 1205 Pfam Tetratricopeptide repeat 189 242 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g17 K12600 SKI3, TTC37; superkiller protein 3 - vvi:100259801 2316.19
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g17 . Blo12g00835 . Bda03g00340 . Bpe04g00300 Bma04g00309 . . . . Cma09g00007 . . . . . . . . . . . . . . . . . . . . . . Cone20ag0003 . Csa04g02754 . . . . . . . . . . . . Cmo09g00008 . . . Car09g00007 . . . . . . . . . . . . . . . . . . . Cme07g00008
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007064 1 4 1 1 1 0 1 0 0 1 1 1 1 1 1 1 0 1 0 0 1 1 1 1 2 1 1 0 1 1 27